PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00020404-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28437.4 Da PI: 7.5995 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.6e-13 | 85 | 131 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr+llP + K +Ka+ L k+v+ +k+L WALNUT_00020404-RA 85 KNHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVQRVKEL 131 58*************************8.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.853 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.12E-13 | 85 | 134 | No hit | No description |
Pfam | PF00010 | 7.5E-11 | 85 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-14 | 86 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-14 | 86 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-12 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 3.0E-5 | 168 | 231 | No hit | No description |
CDD | cd04873 | 6.50E-4 | 168 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MPIGSVEDPN HNHKAEPSMH QPAENQDLYR FITGNGVINV GTYGFPANCE FPGMQSFSCS 60 SSYYPLGVSG LADTPPQDRA LAALKNHKEA EKRRRERINS HLDKLRSLLP CNSKTDKASL 120 LAKVVQRVKE LKEQTSEITE LETFPSETDE ITVLSGDHSD GRLIFKASLC CEDRTDLIPD 180 LIEILKSLHL TTLRAEMATL GGRIRNVLVV AADKDHSIES VHFLQNALKS LLERSSSSDR 240 SKRRRIILDR KMIM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 245 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018810563.1 | 0.0 | PREDICTED: transcription factor bHLH106-like | ||||
Swissprot | O80674 | 3e-85 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A2I4DTT8 | 0.0 | A0A2I4DTT8_JUGRE; transcription factor bHLH106-like | ||||
STRING | EOY08809 | 1e-131 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6672 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 5e-81 | bHLH family protein |
Publications ? help Back to Top | |||
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