PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020347-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CO-like
Protein Properties Length: 475aa    MW: 51900.2 Da    PI: 6.2521
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020347-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.77.3e-061243435
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                          C+ + e+ + l+C+ ++  lC  C ++ H+
  WALNUT_00020347-RA 12 VACDFCTEQLAVLYCRADSAKLCLFCDQHVHS 43
                        57**************************9995 PP
2zf-B_box23.98.8e-085498341
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         ++C+++++++++  C +++  lC++C    H +      H+++p
  WALNUT_00020347-RA 54 SQICDNCSSEPVSVRCATDNLVLCQECDWDAHGScslsasHDRDP 98
                        689*************************99994488888888776 PP
3CCT64.14.1e-22427470144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk +
  WALNUT_00020347-RA 427 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKTS 470
                         7789*************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.684956IPR000315B-box-type zinc finger
SMARTSM003363.0E-11956IPR000315B-box-type zinc finger
CDDcd000211.60E-71244No hitNo description
PROSITE profilePS501199.8975299IPR000315B-box-type zinc finger
PfamPF006432.6E-55498IPR000315B-box-type zinc finger
CDDcd000211.02E-65699No hitNo description
SMARTSM003361.25799IPR000315B-box-type zinc finger
PfamPF062031.8E-16427469IPR010402CCT domain
PROSITE profilePS5101714.951427469IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGSPGSRTGE SVACDFCTEQ LAVLYCRADS AKLCLFCDQH VHSANLLSQK HMRSQICDNC  60
SSEPVSVRCA TDNLVLCQEC DWDAHGSCSL SASHDRDPVE GFSGCPSALE LASLWGIDLQ  120
DKKLNPSAPS ILNWTDGTMD DSSSWVFEKS RAGVMYLQDL IVPNENAIFG VNGGEIVTTS  180
KKQGGPSCGK RRQVMFKQLV ELFKRGLAAE SPRSSADWQG MSLEGVVGLG NGVDGVDEFV  240
GASPVAQQQQ RQAPLTALLM MDLKENNRIV DGDMLWGSNS NGHITQIWDF KLGRLRDLEE  300
TVELEAAYGV NDAGFMVRNF GELMKETSLN KSKMFGDLYQ MNCPTAHDDM AINNNSNNPS  360
TSHGPATSES NNLPMGRPST GSAFGKAGGS GGSKDVQFVE QAFFVRGDSV GTAATPKVDM  420
ELLAQNRGNA MQRYKEKKKT RRYDKHIRYE SRKARADTRK RVKGRFVKTS EAPDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843947.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like isoform X1
TrEMBLA0A2I4GJ800.0A0A2I4GJ80_JUGRE; zinc finger protein CONSTANS-LIKE 14-like isoform X1
STRINGcassava4.1_006085m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-105B-box type zinc finger protein with CCT domain