PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020341-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family CO-like
Protein Properties Length: 475aa    MW: 52122.5 Da    PI: 7.0885
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020341-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.1e-06839435
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                          C+ ++e+ + l+C+ ++  lC  C ++ H+
  WALNUT_00020341-RA  8 VACDFCSEQLAVLYCRADSAKLCLFCDQHVHS 39
                        57**************************9995 PP
2zf-B_box16.71.5e-055094341
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         ++C+++ +++++  C +++  lC++C    H +      H++ p
  WALNUT_00020341-RA 50 SQICDNCCSEPVSVRCDTDNLVLCQECDWDAHGScsvsasHDRNP 94
                        579*************************99994478888887766 PP
3CCT64.33.5e-22427471145
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                         R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++e
  WALNUT_00020341-RA 427 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASE 471
                         7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.741552IPR000315B-box-type zinc finger
SMARTSM003369.5E-12552IPR000315B-box-type zinc finger
CDDcd000218.13E-7840No hitNo description
PROSITE profilePS501199.6554895IPR000315B-box-type zinc finger
CDDcd000219.42E-65281No hitNo description
PfamPF062031.8E-16427469IPR010402CCT domain
PROSITE profilePS5101714.912427469IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGSHGESVAC DFCSEQLAVL YCRADSAKLC LFCDQHVHSA NLLSRKHLRS QICDNCCSEP  60
VSVRCDTDNL VLCQECDWDA HGSCSVSASH DRNPVEGFSG CPSALELASL WGIELDEKKM  120
NPSATSIQNR TISALDDSSS WVFDKSSAGV VCFQDLIVPS ENAIVGVNGC GILTMSKKQG  180
GPSCGKRRQV MYKQLVEIFK RDLAAELPRG SGGWQGMSVE GLAELGNGRD GVDGFVGESC  240
VALQQQQQQK QHQLPQAPLT ALLTMDLKEN NRTVDGDMLW DTHPSGHRTQ IWDFKLGRLR  300
EHEETGTMEV AYDAGFMIKN FGELMEGTSM SNTKLMGDMY RMNCPVGRDD IAFNNNSNNP  360
SASQGPATSE SNNRHMGRPL SGSAFGKGGS GGSKDVPHLE QSFFMRGDSV GTAATTKADM  420
EQLAQNRGNA MQRYKEKKKT RRYDKHIRYE SRKARADTRK RVKGRFVKAS ETTDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018843939.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like
RefseqXP_018843940.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like
TrEMBLA0A2I4GJ600.0A0A2I4GJ60_JUGRE; zinc finger protein CONSTANS-LIKE 15-like
STRINGEMJ235360.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-105B-box type zinc finger protein with CCT domain