PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00020183-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 28670.3 Da PI: 6.3037 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5.1e-18 | 48 | 101 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k WALNUT_00020183-RA 48 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 101 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.8 | 2.2e-41 | 47 | 137 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k++n+ L++++++L++e+ WALNUT_00020183-RA 47 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKADNDVLQAQNQKLQAEI 137 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-19 | 24 | 104 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-19 | 39 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.119 | 43 | 103 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 46 | 107 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-15 | 48 | 101 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.64E-15 | 48 | 104 | No hit | No description |
PRINTS | PR00031 | 9.1E-6 | 74 | 83 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 78 | 101 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.1E-6 | 83 | 99 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.4E-15 | 103 | 143 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGFKCFFVDS GVASFLGKRS LSFSGVELGE EGNGEDDLSD DGSQVGEKKR RLNMEQVKTL 60 EKNFELGNKL EPERKMQLAR ALGLQPRQIA IWFQNRRARW KTKQLEKDYD LLKRQFEAIK 120 ADNDVLQAQN QKLQAEILAL KNREPTESIN LNKETEGSCS NRSENSSEIK LDISRTPAID 180 SPLSTHPISR TLFPSSVRPP GVAQLFQNSS RPDLQCQKMD QMVKEESLSN MFCGMDDQSA 240 FWPWLEQHHF N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 103 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018857022.1 | 1e-177 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 1e-106 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A2I4HLP7 | 1e-176 | A0A2I4HLP7_JUGRE; homeobox-leucine zipper protein ATHB-13-like | ||||
STRING | VIT_01s0026g01950.t01 | 1e-155 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 9e-99 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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