PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020108-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 300aa    MW: 33988.9 Da    PI: 8.3264
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020108-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-1498149155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A+e++k+L+
  WALNUT_00020108-RA  98 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YAQRGDQASIVGGAIEFVKELE 149
                         79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1796165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-1396153No hitNo description
PROSITE profilePS5088815.61297148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-1598162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-1298149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-10103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MALEALSSNE LFNFIVYDTI SAAPYSSHDS SETSFLLENA MPPQNLGAIL ENSSLMTQKR  60
HCGRSQVVER RQNLAVQGRK KRRRKPRVCK NKEEAETQRM THIAVERNRR KQMNEHLSVL  120
RSLMPESYAQ RGDQASIVGG AIEFVKELEH LLQSLEAQKL QLPQPGVGAL IDEDATTCKF  180
RQPPFSQFFV YPQYTWSQIP NKYTTKTEDA IADIEVSLIE THANLRILTR RNPRQLSKLV  240
AGFQTLRLSI LHLNVTTMDP LVLYSISAKV EEGCQLTSVD DIAGAVHHML RIIEGEAVLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17884RKKRRRK
27885RKKRRRKP
37984KKRRRK
498109RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808815.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ9C7T45e-76BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2I4DNU50.0A0A2I4DNU5_JUGRE; transcription factor bHLH71-like
STRINGcassava4.1_012613m1e-149(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]