PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020105-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 362aa    MW: 39041.8 Da    PI: 7.4773
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020105-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-0889113126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC+ f++ GtC+y  +C+FaH+
  WALNUT_00020105-RA  89 FKTKLCCKFRA-GTCPYITNCNFAHS 113
                         69*********.*************8 PP

2zf-CCCH42.21.3e-13242267126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt++C+ +  tG+C++G++C+FaHg
  WALNUT_00020105-RA 242 WKTRICNKWELTGYCPFGSKCHFAHG 267
                         8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.7E-1486121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.58E-886119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8488115IPR000571Zinc finger, CCCH-type
SMARTSM003560.003588114IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-589113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-8161191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-7162191IPR000571Zinc finger, CCCH-type
SMARTSM003560.4163190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.591163191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-17236271IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-10238272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422241269IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9241268IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11242267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDFSSGNVVQ VITGSGPDSW SGGDHAIWAT EDDYRAWNNN GDDTMSTNSN YDQRQSQSRS  60
GSEPPNKKSR NSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP  120
PPNWQDIVAA HEEEKAVVSS EPREEYQIPS LGSSNYVVET QRSFKGRHCK KFYTEEGCPY  180
GENCTFLHDE QSKNRESVAI SLGPGGYGGG GISGGGGSSG GGVGGGAAAG SASGQNAKPS  240
NWKTRICNKW ELTGYCPFGS KCHFAHGAAE LHRYGGGLVE GDTRDSSSAP TDSKQGGVPS  300
KTPAETLVAS VPSVPHSDVY HIGVPSQRSC VAIQRPGQRT HQKWKGPDKI SRIYGDWIDD  360
IE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808830.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM31e-135C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2I4DNW10.0A0A2I4DNW1_JUGRE; zinc finger CCCH domain-containing protein 12-like
STRINGXP_010096556.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-137C3H family protein