PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00020105-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 362aa MW: 39041.8 Da PI: 7.4773 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.9 | 3.5e-08 | 89 | 113 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ WALNUT_00020105-RA 89 FKTKLCCKFRA-GTCPYITNCNFAHS 113 69*********.*************8 PP | |||||||
2 | zf-CCCH | 42.2 | 1.3e-13 | 242 | 267 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg WALNUT_00020105-RA 242 WKTRICNKWELTGYCPFGSKCHFAHG 267 8************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-14 | 86 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.58E-8 | 86 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.84 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-5 | 89 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-8 | 161 | 191 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-7 | 162 | 191 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.4 | 163 | 190 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.591 | 163 | 191 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-17 | 236 | 271 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.42E-10 | 238 | 272 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 241 | 269 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-9 | 241 | 268 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-11 | 242 | 267 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 362 aa Download sequence Send to blast |
MDFSSGNVVQ VITGSGPDSW SGGDHAIWAT EDDYRAWNNN GDDTMSTNSN YDQRQSQSRS 60 GSEPPNKKSR NSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP 120 PPNWQDIVAA HEEEKAVVSS EPREEYQIPS LGSSNYVVET QRSFKGRHCK KFYTEEGCPY 180 GENCTFLHDE QSKNRESVAI SLGPGGYGGG GISGGGGSSG GGVGGGAAAG SASGQNAKPS 240 NWKTRICNKW ELTGYCPFGS KCHFAHGAAE LHRYGGGLVE GDTRDSSSAP TDSKQGGVPS 300 KTPAETLVAS VPSVPHSDVY HIGVPSQRSC VAIQRPGQRT HQKWKGPDKI SRIYGDWIDD 360 IE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018808830.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q9LQM3 | 1e-135 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A2I4DNW1 | 0.0 | A0A2I4DNW1_JUGRE; zinc finger CCCH domain-containing protein 12-like | ||||
STRING | XP_010096556.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7751 | 33 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-137 | C3H family protein |