PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020098-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 399aa    MW: 44891.2 Da    PI: 5.57
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020098-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.8e-081639124
                        TSSS-HHHHHHHHHHHHHTTTT-H CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtW 24
                        +g+WT+eEd++l+d++  +G g +
  WALNUT_00020098-RA 16 KGPWTPEEDQKLIDYISSHGHGIP 39
                        79******************9954 PP
2Myb_DNA-binding59.95.4e-1971118148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd++l+d++  +G g+W+t ++  g++R++k+c++rw +yl
  WALNUT_00020098-RA  71 KGPWTPEEDQKLIDYISSHGHGSWRTLPKLAGLNRCGKSCRLRWTNYL 118
                         79********************************************97 PP
3Myb_DNA-binding47.54.1e-15124167146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+ ++++++   G++ W++Ia +++ gRt++++k++w++
  WALNUT_00020098-RA 124 RGKFSEDEERKIINLHSAIGNK-WSRIAIKLP-GRTDNEIKNYWNT 167
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.1691137IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.3E-81437IPR009057Homeodomain-like
SMARTSM00717261552IPR001005SANT/Myb domain
CDDcd001670.004521837No hitNo description
PROSITE profilePS5129418.95966118IPR017930Myb domain
SuperFamilySSF466891.45E-3068165IPR009057Homeodomain-like
SMARTSM007174.5E-1570120IPR001005SANT/Myb domain
PfamPF002494.7E-1771118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2472125IPR009057Homeodomain-like
CDDcd001672.82E-1173118No hitNo description
PROSITE profilePS5129425.721119173IPR017930Myb domain
SMARTSM007172.1E-14123171IPR001005SANT/Myb domain
PfamPF002495.7E-14124167IPR001005SANT/Myb domain
CDDcd001674.03E-10126169No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25126173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGRSPCGHDD ENGLKKGPWT PEEDQKLIDY ISSHGHGIPS QSNLFLHTFL LCLGTMGRSP  60
CGHDDENGLK KGPWTPEEDQ KLIDYISSHG HGSWRTLPKL AGLNRCGKSC RLRWTNYLRP  120
DIKRGKFSED EERKIINLHS AIGNKWSRIA IKLPGRTDNE IKNYWNTRLR KKLLSMGIDP  180
TTHKPRTDLN HLVNLSQLLG AANFGNLISP WGSALNLQAD ASHLAKIQLL QNMLQLMNTS  240
PLLNMESTHD LFIGNRNLNP FEGFLNGTNT LLNNKEPFQS GLENLNPGLT NPEAPSNFQD  300
FDNSWAGLED GFNPEILGLK NSSLSSTSSY ENEIEIMNPV PESFSDSPHG TYNINQMESK  360
IDPNQLISTD SASTYTIFEA WDKLMDDETN DSYWKDILE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28691735108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808819.10.0PREDICTED: transcription factor MYB39-like
TrEMBLA0A2I4DNU80.0A0A2I4DNU8_JUGRE; transcription factor MYB39-like
STRINGEOY251381e-130(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-83myb domain protein 9