PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020076-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 501aa    MW: 55475.5 Da    PI: 6.2403
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020076-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-12164186426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C f+++tGtCk+G++C+F+H+
  WALNUT_00020076-RA 164 EDCAFYLKTGTCKFGSTCRFNHP 186
                         89********************9 PP
2zf-CCCH31.72.6e-10211232425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                           C++++r+G CkyGd Ck++H
  WALNUT_00020076-RA 211 TACKYYMRSGGCKYGDACKYSH 232
                         67******************** PP
3zf-CCCH41.81.8e-13255279226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++++C+f++rtG CkyG++C+F+H+
  WALNUT_00020076-RA 255 GEKECPFYMRTGSCKYGANCRFNHP 279
                         7899********************9 PP
4zf-CCCH26.88.8e-09389415127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f++tG Cky ++C+++H++
  WALNUT_00020076-RA 389 PGYPECSYFLKTGDCKYKSNCRYHHPK 415
                         689**********************96 PP
5zf-CCCH33.85.8e-11437460326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + +C +++r+G+Ck+G+ CkF H+
  WALNUT_00020076-RA 437 QNICAHYSRYGICKFGPACKFDHP 460
                         679********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-6159188IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69160188IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-10164186IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5166185IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6207234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169207235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-6210236IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8211232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-6213235IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.427253281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6255280IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-11255279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5259278IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-4388415IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76388416IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6389415IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5392417IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-4394414IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6432460IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5434461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624434462IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-8437460IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MMFRVLKCGG RMEASESIYV ASPKIKDPEV AFQSFDSPNP DLDHARSDTG NTAEELTAKF  60
QQLVLKEQWE PAPKDEDEKD GNWGLKEAED GQEAEKGLGG SHWEEVKAGE SEWNGWGDNG  120
NDNGVVIDVV VVEEGSEAED GSERYGGTDT KRYQYQYPVR PEAEDCAFYL KTGTCKFGST  180
CRFNHPVRRK NQAVKEKVKE KEEPTERLGQ TACKYYMRSG GCKYGDACKY SHTRDKISGT  240
TLLELNFLGL PIRPGEKECP FYMRTGSCKY GANCRFNHPD PTAVGGSDNP SGYGNGGSTT  300
LDASQSSIAS WSSSRKFNET APFAPIVLSP SHGVPSQNPE WNGLQAPVYL PERSMHPPVT  360
YVMSPAGTET NVYTHHKQQI QVEEYPERPG YPECSYFLKT GDCKYKSNCR YHHPKDRIVK  420
SPPCALSDKG LPLRPDQNIC AHYSRYGICK FGPACKFDHP LHRASSAMTG VDQHLPYGDS  480
VTTDKAVGGG IGSEATFRQS Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807494.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X2
RefseqXP_018814769.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X2
SwissprotQ9STM41e-137C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2I4DK120.0A0A2I4DK12_JUGRE; zinc finger CCCH domain-containing protein 43-like isoform X2
STRINGEOY223601e-176(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-127C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]