PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00020054-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRAS

Protein Properties

Length: 510aa MW: 57177.4 Da PI: 7.0762

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00020054-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.8	6.1e-112	138	508	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPi 90 lv++Ll+cAeav+ +d++ a++lL++l+ +a g+++qR+a++f+++L+ rla + + + + ps+++ +se+ al+l +e++P WALNUT_00020054-RA 138 LVHQLLACAEAVACRDKAHASTLLSELRANALVFGTSFQRVASCFVQGLSDRLALvQPLGAVGVIGPSAKTMAATSEKDEALHLVYEICPQ 228 68**************************************************9444456666788888878899999******** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176 ++f+h++aN I+ea+ege vH++D+++s qG QW L+q+La+R+++p +lRiTgvg+ +e+l+++g L+ +A++lg++f WALNUT_00020054-RA 229 IQFGHFVANALIMEAFEGEGFVHVVDLGMSlglpQGHQWRRLIQSLANRAGKPIsRLRITGVGD----CAERLQAIGYELELYARSLGLNF 315 **********************99874444889*********666559****....******************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ef v ++++le+l++e++++ gE +++n++lqlhr+++es + +vL+++ +lsPk++v+veqe++hn++ Fl rf+eal+yysa+ WALNUT_00020054-RA 316 EFLV-LESNLENLKTEHFKILDGEIIVINSILQLHRVVKESRGALN---SVLQTLHELSPKLLVLVEQESSHNGPFFLGRFMEALHYYSAI 402 9.699***************************88877777...8************************************* PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357 fdsl++ lp+ + r+k+E++++++ei+n+v+ceg +r+erhe+ +Wr+r+++aGF++ +++ + +q k l k++ +gy++ ee+g+ WALNUT_00020054-RA 403 FDSLDTMLPKYDTRRAKMEQFFFAEEIKNIVSCEGPARVERHEKIDQWRRRMSRAGFQATAVK--MISQTKQWLGKINaCEGYTIMEEKGC 491 ******************************************************99885..78999999999999******** PP GRAS 358 lvlgWkdrpLvsvSaWr 374 lvlgWk++p++++S+Wr WALNUT_00020054-RA 492 LVLGWKSKPIIAASCWR 508 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.414	112	489	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-109	138	508	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MTHPFHIPSV FSAGEKSNGM IVDNLNSSTR NCYPVPSPFR LASSYSWLPF PPSETRSPKR 60 LKQAQSGDET IGSNSNNSGY SFLGTNNSWD RLQFRDHIWT YNQRYLAIQA MEEATTVMME 120 GGQEHEVKED GNGDEVKLVH QLLACAEAVA CRDKAHASTL LSELRANALV FGTSFQRVAS 180 CFVQGLSDRL ALVQPLGAVG VIGPSAKTMA ATSEKDEALH LVYEICPQIQ FGHFVANALI 240 MEAFEGEGFV HVVDLGMSLG LPQGHQWRRL IQSLANRAGK PISRLRITGV GDCAERLQAI 300 GYELELYARS LGLNFEFLVL ESNLENLKTE HFKILDGEII VINSILQLHR VVKESRGALN 360 SVLQTLHELS PKLLVLVEQE SSHNGPFFLG RFMEALHYYS AIFDSLDTML PKYDTRRAKM 420 EQFFFAEEIK NIVSCEGPAR VERHEKIDQW RRRMSRAGFQ ATAVKMISQT KQWLGKINAC 480 EGYTIMEEKG CLVLGWKSKP IIAASCWRWS

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MTHPFHIPSV FSAGEKSNGM IVDNLNSSTR NCYPVPSPFR LASSYSWLPF PPSETRSPKR  60
LKQAQSGDET IGSNSNNSGY SFLGTNNSWD RLQFRDHIWT YNQRYLAIQA MEEATTVMME  120
GGQEHEVKED GNGDEVKLVH QLLACAEAVA CRDKAHASTL LSELRANALV FGTSFQRVAS  180
CFVQGLSDRL ALVQPLGAVG VIGPSAKTMA ATSEKDEALH LVYEICPQIQ FGHFVANALI  240
MEAFEGEGFV HVVDLGMSLG LPQGHQWRRL IQSLANRAGK PISRLRITGV GDCAERLQAI  300
GYELELYARS LGLNFEFLVL ESNLENLKTE HFKILDGEII VINSILQLHR VVKESRGALN  360
SVLQTLHELS PKLLVLVEQE SSHNGPFFLG RFMEALHYYS AIFDSLDTML PKYDTRRAKM  420
EQFFFAEEIK NIVSCEGPAR VERHEKIDQW RRRMSRAGFQ ATAVKMISQT KQWLGKINAC  480
EGYTIMEEKG CLVLGWKSKP IIAASCWRWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-62	145	507	26	378	Protein SCARECROW
5b3h_A	3e-62	145	507	25	377	Protein SCARECROW
5b3h_D	3e-62	145	507	25	377	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018818751.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A2I4EH68	0.0	A0A2I4EH68_JUGRE; DELLA protein RGL1-like
STRING	XP_006484335.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-80	RGA-like 1