PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020022-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 328aa    MW: 36169.5 Da    PI: 4.5228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020022-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08201250155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         rr+ + + +r+RR ri ++++ L+ellP  a    ++    a++L   ++YIk+Lq
  WALNUT_00020022-RA 201 RRKGAMATDRNRRLRIAERINALQELLPYsA---EGG---QASVLDDIIDYIKYLQ 250
                         577778899********************55...544...678************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.80E-7198254No hitNo description
PROSITE profilePS5088812.512200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-10200259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-10201260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-6206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEEESGTRND NPLNLVSTNF SGKANEVSHL PEDDPAQNFI LSDGKCGNQI NALPLAEWIE  60
TPRLCHNYVD YLTESSTFFP KASTEDVLES VPSSVGGIQS VPGGVSKIQS DIMYNNFGMA  120
PASKPVGSLH DMDTSKVWFL RPHDEGEPGN KSISNQCQIH VQDSLKNHTS WAQELVGHND  180
NVSQLDPEIV TTPGFSSKSL RRKGAMATDR NRRLRIAERI NALQELLPYS AEGGQASVLD  240
DIIDYIKYLQ LQIKDLSRSR LGGESSAEPL IFREGYGHYL SQQMLNEPLE EMVGKLLEEN  300
PIAAAQLLES KGLFVMPIDL ADGLCQII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805725.10.0PREDICTED: transcription factor UNE12-like
TrEMBLA0A2I4DEZ50.0A0A2I4DEZ5_JUGRE; transcription factor UNE12-like
STRINGVIT_07s0104g00250.t014e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF121642426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.14e-26LJRHL1-like 2