PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019919-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | WRKY | ||||||||
Protein Properties | Length: 188aa MW: 21804.5 Da PI: 9.9912 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.4 | 2.9e-33 | 109 | 167 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg Hnh+ WALNUT_00019919-RA 109 LDDGYRWRKYGQKAVKNNKFPRSYYRCTYQGCNVKKQVQRLTKDEGIVVTTYEGAHNHS 167 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-34 | 94 | 167 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-29 | 101 | 168 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.033 | 104 | 169 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-39 | 109 | 168 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-27 | 110 | 166 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0010055 | Biological Process | atrichoblast differentiation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MENYQMFFPC PSTGQSSYPL IPNYSTNMGS FNAFQDFQGE SSNGTSFLGL RTENHVPKRA 60 EVKQISHNRS SFSGDIETDQ VKPGKKKGQL KKIRKPRYAF QTRTQVDILD DGYRWRKYGQ 120 KAVKNNKFPR SYYRCTYQGC NVKKQVQRLT KDEGIVVTTY EGAHNHSIEK QSDTFEHILS 180 QMQIYTPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-28 | 99 | 168 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-28 | 99 | 168 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00506 | DAP | Transfer from AT5G13080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018812095.1 | 1e-141 | PREDICTED: probable WRKY transcription factor 75 | ||||
TrEMBL | A0A2I4DY78 | 1e-139 | A0A2I4DY78_JUGRE; probable WRKY transcription factor 75 | ||||
STRING | EOY02841 | 4e-75 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1156 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 2e-54 | WRKY DNA-binding protein 75 |