PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019874-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | G2-like | ||||||||
Protein Properties | Length: 349aa MW: 38853.9 Da PI: 7.876 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.1 | 1.3e-30 | 46 | 99 | 1 | 54 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQ R WALNUT_00019874-RA 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQVQR 99 79*************************************************877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.061 | 43 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-28 | 44 | 99 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.4E-14 | 45 | 100 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.0E-21 | 46 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-8 | 48 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.3E-12 | 90 | 122 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MYHHHQHQGK NIHSSSRMST PPERHLFLQG ANSPGDSGLV LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQVQRH LQLRIEAQGK YLQAVLEKAQ 120 ETLGRQNIGT VGLEAAKMQL SELVSKVSNQ CLNSAFSELK ELQGLCPEQA LATQPTDCSM 180 DSCLTSCEGS QKDQEIHNRG MGMRPYSVNA FLEQKEMSEG HVVQKTELKW SEDLKESMLH 240 SSMVKDTQRR MFPIDRSSND LSMRIGLQGE KGNGSKSCSG GRFKGRDLED NFLDRINKKA 300 ESSKPENEKN SQGYRVPYFV AKLDLNAHDE NDAAAAAGSC KQFDLNGFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-19 | 45 | 104 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-19 | 45 | 104 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-19 | 45 | 104 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-19 | 45 | 104 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-19 | 45 | 104 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-19 | 45 | 104 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-19 | 45 | 104 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-19 | 45 | 104 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018832813.1 | 0.0 | PREDICTED: myb-related protein 2-like | ||||
Refseq | XP_018832814.1 | 0.0 | PREDICTED: myb-related protein 2-like | ||||
Refseq | XP_018832815.1 | 0.0 | PREDICTED: myb-related protein 2-like | ||||
Swissprot | Q9FK47 | 6e-90 | PHLA_ARATH; Myb-related protein 1 | ||||
TrEMBL | A0A2I4FMC5 | 0.0 | A0A2I4FMC5_JUGRE; myb-related protein 2-like | ||||
STRING | cassava4.1_008434m | 1e-163 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.1 | 1e-110 | G2-like family protein |
Publications ? help Back to Top | |||
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