PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019874-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family G2-like
Protein Properties Length: 349aa    MW: 38853.9 Da    PI: 7.876
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019874-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.11.3e-304699154
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                        kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQ  R
  WALNUT_00019874-RA 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQVQR 99
                        79*************************************************877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.06143103IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-284499IPR009057Homeodomain-like
SuperFamilySSF466893.4E-1445100IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-2146100IPR006447Myb domain, plants
PfamPF002491.1E-84897IPR001005SANT/Myb domain
PfamPF143797.3E-1290122IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MYHHHQHQGK NIHSSSRMST PPERHLFLQG ANSPGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQVQRH LQLRIEAQGK YLQAVLEKAQ  120
ETLGRQNIGT VGLEAAKMQL SELVSKVSNQ CLNSAFSELK ELQGLCPEQA LATQPTDCSM  180
DSCLTSCEGS QKDQEIHNRG MGMRPYSVNA FLEQKEMSEG HVVQKTELKW SEDLKESMLH  240
SSMVKDTQRR MFPIDRSSND LSMRIGLQGE KGNGSKSCSG GRFKGRDLED NFLDRINKKA  300
ESSKPENEKN SQGYRVPYFV AKLDLNAHDE NDAAAAAGSC KQFDLNGFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-1945104160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-1945104160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-1945104160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-1945104160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-1945104160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-1945104160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-1945104160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-1945104160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018832813.10.0PREDICTED: myb-related protein 2-like
RefseqXP_018832814.10.0PREDICTED: myb-related protein 2-like
RefseqXP_018832815.10.0PREDICTED: myb-related protein 2-like
SwissprotQ9FK476e-90PHLA_ARATH; Myb-related protein 1
TrEMBLA0A2I4FMC50.0A0A2I4FMC5_JUGRE; myb-related protein 2-like
STRINGcassava4.1_008434m1e-163(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.11e-110G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]