PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019810-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 623aa    MW: 70181.6 Da    PI: 8.0941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019810-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1721.8e-533084371128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+
  WALNUT_00019810-RA 308 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKEkcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGR 397
                         69****************************.9***************952444443456******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         dk+++ ++ + +g++ktLvfy+grap+g+ktdW+mheyrl
  WALNUT_00019810-RA 398 DKAIHLSNAKSIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 437
                         **************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF533351.11E-8105268IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.2E-9173256IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF1019413.27E-59299457IPR003441NAC domain
PROSITE profilePS5100558.144308457IPR003441NAC domain
PfamPF023651.1E-27309437IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MHAYMATYQR THVAGCVLEF TKLGLHHVIS DETEKGKRKA KGKGSFAFRT NCSISISKER  60
WSSSSRSRSC VGNLKVSAAK SQEPVDSSRA EATQEEEEGD DENYRVLSAV KSSFNDILIL  120
DSSKSRILLL DSTHNVHSIL YKDQKWTGSY WDEFASLPAI VPKGPIAIFG LLIDKAREYL  180
GLSYLEKHTV AGGILNVHIG DALSQSVNVS EGYAGIVIDL FSEGKVLPQL QEVNTWLELT  240
DRLMPKGRLM VNCGGINELS WKRMPKRDGE NYLALTGPLP DLASWSAMVP GLLIKDQKMM  300
PGNGQLSVPP GFRFHPTDEE LLYYYLRKKV SYEAIDLDVI REVDLNKLEP WDLKEKCRIG  360
SGPQNEWYFF SHKDKKYPTG TRTNRATTAG FWKATGRDKA IHLSNAKSIG MRKTLVFYTG  420
RAPHGQKTDW IMHEYRLDDD NSQVQEDGWV VCRVFKKKNH CRVFQPESAQ EAEHFTQMKA  480
SGSAPVLLEP KQTHLRPLYD YKFDGPMHLP QLFSPESAFA QPSFISPASL NTMDIQCSQN  540
LLRLTAGGCA GLMHQERFNG DWSFLDKLLA SHHQSMDHHQ HPQSKCNPSS HQVPDHVGSS  600
SSTSQKFPFQ YLGCETDILK FSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4930445911170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811818.10.0PREDICTED: protein SOMBRERO-like isoform X1
SwissprotQ9MA171e-126SMB_ARATH; Protein SOMBRERO
TrEMBLA0A2I4DXD70.0A0A2I4DXD7_JUGRE; protein SOMBRERO-like isoform X1
STRINGVIT_19s0085g01210.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-118NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]