PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019649-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 514aa    MW: 57402.5 Da    PI: 6.0937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019649-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-17144190148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
  WALNUT_00019649-RA 144 KGQWTDEEDRKLIRLVKQYGVRKWAQIAEKLA-GRAGKQCRERWHNHL 190
                         799*****************************.*************97 PP
2Myb_DNA-binding50.45.3e-16196238145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eE+ +lv+ +++ G++ W+ Ia+ ++ gRt++ +k++w+
  WALNUT_00019649-RA 196 KDSWSEEEERILVETHAKVGNR-WAEIAKFIP-GRTENAIKNHWN 238
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.687139194IPR017930Myb domain
SuperFamilySSF466893.13E-30143237IPR009057Homeodomain-like
SMARTSM007171.6E-17143192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-27145197IPR009057Homeodomain-like
PfamPF139212.3E-20147205No hitNo description
CDDcd001673.84E-16147190No hitNo description
SMARTSM007171.0E-14195243IPR001005SANT/Myb domain
PROSITE profilePS5129420.941195245IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-20198243IPR009057Homeodomain-like
CDDcd001675.53E-12198238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MEGGGEGTVT GGDACGHGNS QSNHPICRSG PPFTAIDRFL YGHNTHFSQT QTQNHAKNKE  60
VVVSDTVLCS FPRSWGAIGG GFSWPSIPEV NVSDDFFVDG ETLNWMHEGS PTMGLKEKME  120
VSGKSSSKGV GKAARKGSSE ALIKGQWTDE EDRKLIRLVK QYGVRKWAQI AEKLAGRAGK  180
QCRERWHNHL RPDIKKDSWS EEEERILVET HAKVGNRWAE IAKFIPGRTE NAIKNHWNAT  240
RRRQNSRRKN KQTENQKAGK PHSSVLQDYI RSKSTLMISK STSTTTSSKT MIENPLTQFN  300
NFLPELSEIS PLTHDEVDSP TMNISLTYDD ELLFMQNLFA NHFDQPYVHD NINKVMTTAD  360
DPTVLLAETF HVVDDQFKDS STSIDSNDFR QNKGDQLLTD VVECGFSSFT SKSSLQYCIN  420
NEVLQAKGTF TSTSATATTY LHSDLYLSNY LLNGAANSLS ANDYSYDDNI MNVDLLTDQS  480
LDDFSTGRKE IDLFEFVSSN SQSSQGSNSS FFLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-471422442104C-Myb DNA-Binding Domain
1msf_C1e-471422442104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842936.10.0PREDICTED: uncharacterized protein LOC109007631
TrEMBLA0A2I4GGB60.0A0A2I4GGB6_JUGRE; uncharacterized protein LOC109007631
STRINGXP_002525613.11e-134(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.17e-62myb domain protein 119