PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00019634-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

SRS

Protein Properties

Length: 329aa MW: 36477.1 Da PI: 6.9115

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00019634-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	214.6	2.2e-66	95	258	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa............aeaaskrkrel.... 78 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a++++ + + + + WALNUT_00019634-RA 95 GGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTALQQQIQPHDqqheqdqhqeqqQ---------Qlrgd 176 789***********************************************9999877554443444444433330.........14555 PP DUF702 79 ........kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 k+ ++ l++t++++++s le ++P+ev+s+avfrcvrvs+++d +e++aYqtav+igGhvfkGiLydqG ++ WALNUT_00019634-RA 177 npkrqqrdKQLGAAPLACTRIPNTTSG--LELGQFPAEVNSPAVFRCVRVSAMEDPDEQYAYQTAVNIGGHVFKGILYDQGRDD 258 555443325555666788888888755..78889*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.9E-66	96	257	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-26	98	140	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.7E-27	208	255	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MAGFFYLGGR EGQQNKQEEE EEEKQERNLF LYRNEEICNK GFELWPQYYS QQQNLSNYYS 60 FGVGPSRRNP NSVSDNHEPS RSGFALISQA GGLGGGMNCQ DCGNQAKKDC SHLRCRTCCK 120 SRGFQCQTHV KSTWVPAAKR RERQQQLTAL QQQIQPHDQQ HEQDQHQEQQ QQLRGDNPKR 180 QQRDKQLGAA PLACTRIPNT TSGLELGQFP AEVNSPAVFR CVRVSAMEDP DEQYAYQTAV 240 NIGGHVFKGI LYDQGRDDRY TPGGESSSGG DGGGAQHLNL IMGGPTTATT TTTTATTSNP 300 SATLLDPSLY PASLNAFMAG TQFFPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018843838.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	7e-95	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A2I4GIV8	0.0	A0A2I4GIV8_JUGRE; protein SHI RELATED SEQUENCE 5-like
STRING	EOY14902	1e-132	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	4e-74	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]