PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00019519-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 504aa MW: 54291.1 Da PI: 6.3223

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00019519-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.7e-39	144	204	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ WALNUT_00019519-RA 144 PDKILPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNAA 204 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	131	201	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-32	146	202	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.807	148	202	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	150	186	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MSEAKDPAIK LFGKTIPVPE IPTNGSIDSS GAPAPSSVPV VDDNIDQDRA CSTNSSPEAN 60 TDRDGEERAA EKDVLGEKPS GNKQEGPGSP VSSEELTNPD VTSGISENSK TLPVEKESAT 120 LKPSKSEEER SDSSNSQEKP LKKPDKILPC PRCSSMDTKF CYYNNYNVNQ PRHFCKNCQR 180 YWTAGGTMRN VPVGAGRRKN KNAASHYRHI NVSEALQNAQ TDLPNGVHHP SLRPDGTVLT 240 FGSDTPLCES MASVLNLADK TMRNCKQNGF HRPEELRIPV SYGGGENGDD PSNGASVSTS 300 NSTDEPGKTG SQEQAMRICQ GFPPQIPCFP GAPWPYPWNS TQWSSPIPPP AFCPPGFPMP 360 FYPAAAYWGC TVPGAWSMPW LPQPTSPTPN SGPNSPTLGK HSRDENVLKS SNSGEGEPLK 420 ENNTERCLWI PKTLRIDDPG EAAKSSIWAT LGIKNDKANS ISGGGLFKAF QSKSDKKNNI 480 AEASPVLQAN PAALSRSLNF HESS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MSEAKDPAIK LFGKTIPVPE IPTNGSIDSS GAPAPSSVPV VDDNIDQDRA CSTNSSPEAN  60
TDRDGEERAA EKDVLGEKPS GNKQEGPGSP VSSEELTNPD VTSGISENSK TLPVEKESAT  120
LKPSKSEEER SDSSNSQEKP LKKPDKILPC PRCSSMDTKF CYYNNYNVNQ PRHFCKNCQR  180
YWTAGGTMRN VPVGAGRRKN KNAASHYRHI NVSEALQNAQ TDLPNGVHHP SLRPDGTVLT  240
FGSDTPLCES MASVLNLADK TMRNCKQNGF HRPEELRIPV SYGGGENGDD PSNGASVSTS  300
NSTDEPGKTG SQEQAMRICQ GFPPQIPCFP GAPWPYPWNS TQWSSPIPPP AFCPPGFPMP  360
FYPAAAYWGC TVPGAWSMPW LPQPTSPTPN SGPNSPTLGK HSRDENVLKS SNSGEGEPLK  420
ENNTERCLWI PKTLRIDDPG EAAKSSIWAT LGIKNDKANS ISGGGLFKAF QSKSDKKNNI  480
AEASPVLQAN PAALSRSLNF HESS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC853233	0.0	KC853233.1 Juglans regia dof zinc finger protein DOF5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018813986.1	0.0	PREDICTED: cyclic dof factor 2-like
Refseq	XP_018813987.1	0.0	PREDICTED: cyclic dof factor 2-like
Swissprot	Q93ZL5	1e-124	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	A0A2I4E3L9	0.0	A0A2I4E3L9_JUGRE; cyclic dof factor 2-like
STRING	EMJ16453	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-111	cycling DOF factor 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]