PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019490-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NAC
Protein Properties Length: 365aa    MW: 41389.1 Da    PI: 7.6195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019490-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.62.5e-36782201128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                         lp+G++F+Ptd+el+ e+L++kve+k+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++ 
  WALNUT_00019490-RA  78 LPAGVKFDPTDQELI-EHLEAKVEAKDmkshplI---DefitTIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKIQt 163
                         799************.99*********5555442...133334776646**********.555666799******************7333 PP

                 NAM  80 .......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  WALNUT_00019490-RA 164 ecdlqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 220
                         4555544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3874239IPR003441NAC domain
PROSITE profilePS5100532.95678239IPR003441NAC domain
PfamPF023651.5E-1679220IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKSRLKQRRG RTPRALENPT GRDQQDQLEM NKSSSSTVGS ISSSDLIDAK LEEHQMCGSK  60
QCPGCGHKLE GKPDWLGLPA GVKFDPTDQE LIEHLEAKVE AKDMKSHPLI DEFITTIEGE  120
DGICYTHPEK LPGVTRDGLS KHFFHRPSKA YTTGTRKRRK IQTECDLQGG ETRWHKTGKT  180
RPVMVNGKQK GCKKILVLYT NFGKNRKPEK TNWVMHQYHL GQNEEEKEGE LVVSKIFYQT  240
QPRQCNWSER SATTGEGSSE PNSRRDSGSG SCSSSREMIP QRDHDQVSPP PGVNAHQMSA  300
GYNAMDIQQF KSDQHFSFAP DRNDSTSLYF FFLVFGESSI QNPQEAEWLK YSSFWPDPDN  360
QDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-137622013140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837819.10.0PREDICTED: NAC domain-containing protein 35-like isoform X1
RefseqXP_018837820.10.0PREDICTED: NAC domain-containing protein 35-like isoform X2
RefseqXP_018837822.10.0PREDICTED: NAC domain-containing protein 102-like isoform X4
RefseqXP_018846368.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotQ9M0F81e-142NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2I4G1P40.0A0A2I4G1P4_JUGRE; NAC domain-containing protein 102-like isoform X4
TrEMBLA0A2I4G1R20.0A0A2I4G1R2_JUGRE; NAC domain-containing protein 35-like isoform X1
TrEMBLA0A2I4GR430.0A0A2I4GR43_JUGRE; NAC domain-containing protein 73-like
STRINGVIT_11s0016g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-140NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]