PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019430-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 349aa    MW: 39109.6 Da    PI: 6.3943
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019430-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd++l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
  WALNUT_00019430-RA 14 KGPWSPEEDDKLKTYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                        79*********************************************97 PP

2Myb_DNA-binding36.31.3e-1169111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd ++  ++   G++ W+ Ia  ++ gRt++++k++w++
  WALNUT_00019430-RA  69 GGFSEEEDNIICSLFLSIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                         569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.401962IPR017930Myb domain
SuperFamilySSF466891.14E-2611109IPR009057Homeodomain-like
SMARTSM007172.6E-131364IPR001005SANT/Myb domain
PfamPF002494.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-241569IPR009057Homeodomain-like
CDDcd001672.30E-101662No hitNo description
PROSITE profilePS5129420.71463117IPR017930Myb domain
SMARTSM007177.3E-1067115IPR001005SANT/Myb domain
PfamPF002494.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2270117IPR009057Homeodomain-like
CDDcd001673.14E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDDKLKTYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDNIIC SLFLSIGSRW SIIAGQLPGR TDNDIKNYWN TRLKKKLLGR  120
QRKDQQTRAR RGNSLKQEIM KRESCDQTFM VPGVMNQSPY WSAEIPAAAT VMSSDQDPTD  180
LDQDQVTLRS LLIKLGENFS DHQPNSTATT TTTNFQYPIG IISSPQDHQP YANTSSFLAS  240
TFSAATNCSD KTCTDQLSNM FQRLEDFPNQ LCEFGYENPP QLDHGLEGFY GMEMINASTA  300
TASISGESSS WGDISSLVSD HHEGNCQQGL PQLQDSAFEN LRYFAPAQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860365.10.0PREDICTED: transcription factor RAX3-like
SwissprotQ9M2Y94e-81RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A2I4HW260.0A0A2I4HW26_JUGRE; transcription factor RAX3-like
STRINGPOPTR_0007s14630.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-74myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]