PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019430-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB | ||||||||
Protein Properties | Length: 349aa MW: 39109.6 Da PI: 6.3943 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ +++q+G+g +W + ++++g++R++k+c++rw++yl WALNUT_00019430-RA 14 KGPWSPEEDDKLKTYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.3 | 1.3e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia ++ gRt++++k++w++ WALNUT_00019430-RA 69 GGFSEEEDNIICSLFLSIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.401 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.14E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.30E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.714 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-10 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.14E-7 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDDKLKTYIE QHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNLKHGG FSEEEDNIIC SLFLSIGSRW SIIAGQLPGR TDNDIKNYWN TRLKKKLLGR 120 QRKDQQTRAR RGNSLKQEIM KRESCDQTFM VPGVMNQSPY WSAEIPAAAT VMSSDQDPTD 180 LDQDQVTLRS LLIKLGENFS DHQPNSTATT TTTNFQYPIG IISSPQDHQP YANTSSFLAS 240 TFSAATNCSD KTCTDQLSNM FQRLEDFPNQ LCEFGYENPP QLDHGLEGFY GMEMINASTA 300 TASISGESSS WGDISSLVSD HHEGNCQQGL PQLQDSAFEN LRYFAPAQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018860365.1 | 0.0 | PREDICTED: transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 4e-81 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A2I4HW26 | 0.0 | A0A2I4HW26_JUGRE; transcription factor RAX3-like | ||||
STRING | POPTR_0007s14630.1 | 1e-128 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 2e-74 | myb domain protein 84 |
Publications ? help Back to Top | |||
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