PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019393-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 667aa    MW: 74729.9 Da    PI: 6.5111
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019393-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.8e-12326382155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g +rk  + g ++ +e+Aa+a++ a++k++g
  WALNUT_00019393-RA 326 SQYRGVTRHRWTGRYEAHLWDnTCKkEGqIRKGRQ-GGYDLEEKAARAYDLAALKYWG 382
                         78*******************87777777777777.669999**************98 PP
2AP243.57.9e-14427476355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  WALNUT_00019393-RA 427 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFCTQEEAAEAYDIAAIKFRG 476
                         9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-18326390No hitNo description
SuperFamilySSF541715.49E-14326391IPR016177DNA-binding domain
PfamPF008474.0E-9326382IPR001471AP2/ERF domain
PROSITE profilePS5103217.095327390IPR001471AP2/ERF domain
SMARTSM003802.7E-21327396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-12327391IPR001471AP2/ERF domain
PRINTSPR003675.2E-6328339IPR001471AP2/ERF domain
CDDcd000181.03E-23425486No hitNo description
SuperFamilySSF541717.85E-17425485IPR016177DNA-binding domain
PROSITE profilePS5103218.782426484IPR001471AP2/ERF domain
SMARTSM003809.6E-33426490IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17426484IPR001471AP2/ERF domain
PfamPF008471.6E-8427476IPR001471AP2/ERF domain
PRINTSPR003675.2E-6466486IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MKSMENDHKN NNSDDNNTKW LGFSLSPQLT MEVPSGPSNH HRTHPPSDAT TVSSAVPASF  60
FHSQPHLNHG IYYGSEGENA GLYSPLPMMP FKYDKSLFIM EALSKSQPQA MVTSTTTPKL  120
EDFFDGATMG TQHYESNERE AMVLSLDSMF YNQTPDHETN YQNILDYFEQ NSRIQEQPRQ  180
IHAHQYSYYS DFRSHDMILG DTRESQFSDC DLQLPTMADD GVPGMKNWVT RNHSANHLVQ  240
QKMTGFMCDI GTESGTISAT SFGGLQSLSL STSPGSQSSC FTGSRRISSS VTDSTGVHTK  300
KRGLDKVEET KVVHRKSLDT FGQRTSQYRG VTRHRWTGRY EAHLWDNTCK KEGQIRKGRQ  360
GGYDLEEKAA RAYDLAALKY WGPSTHINFP LEDYQRELDE MKNMTRQEYV AHLRRKSSGF  420
SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFCTQ EEAAEAYDIA AIKFRGVNAV  480
TNFDITSYDV ERIMESSTLL SGELAKRNKT GSTIEPLDYL PTDNSNGEAI VSQKMINECE  540
SEWKMALYHE SSGEIDDHKA AKIDNCRTQF FSVASDDIIQ QEAEDSAKMG THSSNASSLV  600
TSLSSSREGS LDRAGLPLML SGLPPSASNL FTNPTGMINS WIPSTQLRRP ALSMPYSIPV  660
FAAWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837264.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ84Z021e-140CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2I4G0440.0A0A2I4G044_JUGRE; AP2-like ethylene-responsive transcription factor AIL7
STRINGVIT_07s0151g00440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-120AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]