PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00019248-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 365aa MW: 41389.1 Da PI: 9.8131

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00019248-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	185	238	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH rFv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ WALNUT_00019248-RA 185 PRMRWTTTLHGRFVHAVDLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 238 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.12E-15	182	238	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-28	183	238	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-23	185	238	IPR006447	Myb domain, plants
Pfam	PF00249	4.9E-6	186	237	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PTTTSWKRRT DQEEVDLGFW KRALDSRNSV SSMAKPDTCF 60 ELSLSNPRAS ESLSNHNHNH QHGNGNLFHT FQRNQYHHHQ HQLHHQPMFQ QPPQGLSHEL 120 DFLRPIRGIP VYQNLPAFPF SQQLLDASQP SIANTTTSSS PFQSQGLMRS RFLSRFPAKR 180 SMRAPRMRWT TTLHGRFVHA VDLLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK 240 TTDRAAASSG QSDVFENGSS GDTNSEDLMF DVQNPRRPER SINQQGIRPL TPQDKDYHGL 300 WSNSSSREAW LHGKPKDSGG NMPSLEDMDP KCLSYERNSD VSSSTTHSRT SPKKPNLEFT 360 LGRPL

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PTTTSWKRRT DQEEVDLGFW KRALDSRNSV SSMAKPDTCF  60
ELSLSNPRAS ESLSNHNHNH QHGNGNLFHT FQRNQYHHHQ HQLHHQPMFQ QPPQGLSHEL  120
DFLRPIRGIP VYQNLPAFPF SQQLLDASQP SIANTTTSSS PFQSQGLMRS RFLSRFPAKR  180
SMRAPRMRWT TTLHGRFVHA VDLLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK  240
TTDRAAASSG QSDVFENGSS GDTNSEDLMF DVQNPRRPER SINQQGIRPL TPQDKDYHGL  300
WSNSSSREAW LHGKPKDSGG NMPSLEDMDP KCLSYERNSD VSSSTTHSRT SPKKPNLEFT  360
LGRPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	186	240	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	186	240	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	186	240	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	186	240	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	186	240	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018840880.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	4e-97	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A2I4GAI5	0.0	A0A2I4GAI5_JUGRE; probable transcription factor KAN2 isoform X1
STRING	POPTR_0001s02010.1	1e-174	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	3e-78	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]