PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019197-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRF
Protein Properties Length: 349aa    MW: 38283.6 Da    PI: 9.2607
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019197-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.51.3e-24133176144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDG+kWRCsr+v++gkk+CErH hrgr+rsrk++e
  WALNUT_00019197-RA 133 DPEPGRCRRTDGRKWRCSRDVVAGKKYCERHAHRGRNRSRKPVE 176
                         79***************************************987 PP
2QLQ47.74.7e-1770106137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         s+F+ aQ q+L+ Q+l+++y++a++ vPpeLlq+i+k
  WALNUT_00019197-RA  70 SYFSLAQRQELELQALIFRYMLAGAAVPPELLQPIKK 106
                         79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-870106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.56371106IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.2E-1271104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.803133177IPR014977WRC domain
PfamPF088797.6E-21134176IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDKELRNQPD SDKQPSAKVP KPFLEPHQQQ PQPSGSALPL LTPEPNSKIG SLLAFPDSAL  60
AATRFPGMGS YFSLAQRQEL ELQALIFRYM LAGAAVPPEL LQPIKKSLLH TPYFLHHSLQ  120
HYPHFQPAKL PLDPEPGRCR RTDGRKWRCS RDVVAGKKYC ERHAHRGRNR SRKPVEIPTS  180
ITTNYSATEA FSGGETLKLK ATTPTAALPL ETVAGAIHFA LSGPSPSSID LLQFNPRHIL  240
RPFFDDWPRS LQQYDNAGSK ASPMNSATGL SISTPGNSSS DVSLKLSTDA PGMAMQSRSN  300
YIWIGCCWMG NKPCDFHGGS ASRSIQIFNV QFIDKECSSS TAPCICLSG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4779841e-39AM477984.2 Vitis vinifera contig VV78X100436.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810586.11e-129PREDICTED: growth-regulating factor 3-like isoform X2
SwissprotQ9SJR54e-63GRF3_ARATH; Growth-regulating factor 3
TrEMBLA0A2I4DTW01e-128A0A2I4DTW0_JUGRE; growth-regulating factor 3-like isoform X2
STRINGEOY081481e-111(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.15e-57growth-regulating factor 3
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  3. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  4. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]