PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019177-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | NAC | ||||||||
Protein Properties | Length: 367aa MW: 41842.5 Da PI: 4.6466 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.2 | 1.1e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd WALNUT_00019177-RA 6 LPPGFRFHPTDEELVAYYLDRKISGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKD 95 79****************************.99**************96435566888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+s ++++vg+kktLv+y+grap+g +++Wvmheyrl WALNUT_00019177-RA 96 RSVHS-HKRAVGMKKTLVYYRGRAPHGIRSNWVMHEYRL 133 *****.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-63 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.107 | 6 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-28 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MAPMSLPPGF RFHPTDEELV AYYLDRKISG RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATQAGYWK ATGKDRSVHS HKRAVGMKKT LVYYRGRAPH 120 GIRSNWVMHE YRLIDSVCGN SESSSSLKES YALCRVFKKT LIQMPKTKEE QEPILNLDHK 180 KDSVVLDEQI FGDDISINTG VETNSRGRRS SEVLEDENFV AEYSCKFPSD TSSSDLTQGT 240 PAETAIADDF QAQFASDEAN SAADLCAVGV ECPSNPTDQQ DTLYVPNYTE VLDYNYQLPN 300 YPPLELEDFP QINLTETRSL KPEIIYEYIS HDKYGRPDDM NGTLEEIFSL CSSQDHHNSS 360 NINALSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-57 | 1 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-57 | 1 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-57 | 1 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-57 | 1 | 159 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-57 | 1 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-57 | 1 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-57 | 1 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-57 | 1 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-57 | 1 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-57 | 1 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-57 | 1 | 159 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-57 | 1 | 159 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-57 | 1 | 159 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-57 | 1 | 159 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018833010.1 | 0.0 | PREDICTED: NAC transcription factor 29 | ||||
TrEMBL | A0A2I4FN01 | 0.0 | A0A2I4FN01_JUGRE; NAC transcription factor 29 | ||||
STRING | XP_008371963.1 | 1e-175 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10508 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-102 | NAC domain containing protein 20 |