PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00019069-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

CAMTA

Protein Properties

Length: 1105aa MW: 123601 Da PI: 5.3916

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00019069-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.7	9.1e-53	30	132	3	105
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 + ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een+t WALNUT_00019069-RA 30 EARSRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENET 120 459************************************************************************************** PP CG-1 94 fqrrcywlLeee 105 fqrr+yw+Le++ WALNUT_00019069-RA 121 FQRRSYWMLEQN 132 ********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	72.576	24	150	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-69	27	407	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.1E-46	30	133	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	8.7E-8	486	591	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	8.5E-7	505	578	IPR002909	IPT domain
SuperFamily	SSF81296	4.36E-18	505	591	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	5.91E-14	689	808	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.575	689	800	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-13	691	810	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.25E-11	695	803	No hit	No description
SuperFamily	SSF52540	1.06E-8	920	974	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.056	923	945	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0015	925	944	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.913	925	953	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0076	946	968	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.395	947	971	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.9E-4	949	968	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1105 aa Download sequence Send to blast
MPISRVCFMG LDSVLLGSHL FLDIQQILAE ARSRWLRPAE ICEILRNYQK FHIASEPPNR 60 PPSGSLFLFD RKVLRYFRKD GHNWRKKKDG KTVKEAHEKL KVGSVDVLHC YYAHGEENET 120 FQRRSYWMLE QNRDLYSSLP KRLLFGFFMG NRTNIGGIRE RDEVASDFQK DSPLSSSFPT 180 NHKGAPSGST DSPSPTNSVT SLCEDADSED SYQASSRSRF LESPSMENGP LTDRMDAGGA 240 SSYFVHPSAD VQKDGPRDSD GVTHATGSED AIDLASWEEV LENSRGFHTS VTSRASSEPQ 300 STLTDIFLGQ ENMTIGDNLD GESVLKEEFQ NTVPRQPNWQ ISFGDNSVHL STWPMNQLSN 360 FELANDLGTA LFEPGTLDMN AISAPEPFST HPVQQNEQRV QHHLQTQLTN AESQFSIKSN 420 SQTDMLFEGT NGNYALTLRK PLLDGEEALK KVDSFSRWVT RELGDVDDLH LQSSSGLSWS 480 TVECGNVVDD SSLSPSLSQD QLFSILDFSP KWAYTDSETE VLITGTFLKS LPEVTKCNWS 540 CMFGEVEVPA EVLANGILCC HTPPHTVGQV PFYITCSNRV ACSEVREFDY RVGSIKDIDI 600 AVIYSGAANE MDLHLRLERL LSLSSVVPPS HVVESVTVKQ ELISKIITLK EEEEYNQTLE 660 PILQRDLSQH EVKEYLLKLL LKEKLYSWLL RKVCEDGKGP SILDDDGQGV IHLAAALGYD 720 WAIKPIVTAE VSINFRDING WTALHWAASC GRQDPLNLIL VEQTVAFLVS LGAAPGALTD 780 PSPEFPLGKT PADLASGKGH KGISGFIAES SLTSYLKSLT MNDQKEDGMP EVSGTKGVLT 840 ISERTATPVN YVDAADALSL KDSLNAVCNA TQAADRIHQM FRMHSFERRQ ITQHDDGGGS 900 LSDECALSLV SAKTRKPGQS DRLVHAAATH IQKKYRGWKK RKEFLTIRQR IVKIQAHVRG 960 HQVRKQYRTI VWSVGILEKV ILRWRRKGIG LRGFRPDVHK DPKPQVVPST EDDYDFLKEG 1020 RKQTEERLQK ALTRVKSMVQ YPEGRAQYRR LLTVVEGFRE TKAGHMVLNS PEETGDGDED 1080 EIDINALLDD EMLMDDEAFM SIAFE

Sequence ? help Back to Top

Protein Sequence Length: 1105 aa Download sequence Send to blast

MPISRVCFMG LDSVLLGSHL FLDIQQILAE ARSRWLRPAE ICEILRNYQK FHIASEPPNR  60
PPSGSLFLFD RKVLRYFRKD GHNWRKKKDG KTVKEAHEKL KVGSVDVLHC YYAHGEENET  120
FQRRSYWMLE QNRDLYSSLP KRLLFGFFMG NRTNIGGIRE RDEVASDFQK DSPLSSSFPT  180
NHKGAPSGST DSPSPTNSVT SLCEDADSED SYQASSRSRF LESPSMENGP LTDRMDAGGA  240
SSYFVHPSAD VQKDGPRDSD GVTHATGSED AIDLASWEEV LENSRGFHTS VTSRASSEPQ  300
STLTDIFLGQ ENMTIGDNLD GESVLKEEFQ NTVPRQPNWQ ISFGDNSVHL STWPMNQLSN  360
FELANDLGTA LFEPGTLDMN AISAPEPFST HPVQQNEQRV QHHLQTQLTN AESQFSIKSN  420
SQTDMLFEGT NGNYALTLRK PLLDGEEALK KVDSFSRWVT RELGDVDDLH LQSSSGLSWS  480
TVECGNVVDD SSLSPSLSQD QLFSILDFSP KWAYTDSETE VLITGTFLKS LPEVTKCNWS  540
CMFGEVEVPA EVLANGILCC HTPPHTVGQV PFYITCSNRV ACSEVREFDY RVGSIKDIDI  600
AVIYSGAANE MDLHLRLERL LSLSSVVPPS HVVESVTVKQ ELISKIITLK EEEEYNQTLE  660
PILQRDLSQH EVKEYLLKLL LKEKLYSWLL RKVCEDGKGP SILDDDGQGV IHLAAALGYD  720
WAIKPIVTAE VSINFRDING WTALHWAASC GRQDPLNLIL VEQTVAFLVS LGAAPGALTD  780
PSPEFPLGKT PADLASGKGH KGISGFIAES SLTSYLKSLT MNDQKEDGMP EVSGTKGVLT  840
ISERTATPVN YVDAADALSL KDSLNAVCNA TQAADRIHQM FRMHSFERRQ ITQHDDGGGS  900
LSDECALSLV SAKTRKPGQS DRLVHAAATH IQKKYRGWKK RKEFLTIRQR IVKIQAHVRG  960
HQVRKQYRTI VWSVGILEKV ILRWRRKGIG LRGFRPDVHK DPKPQVVPST EDDYDFLKEG  1020
RKQTEERLQK ALTRVKSMVQ YPEGRAQYRR LLTVVEGFRE TKAGHMVLNS PEETGDGDED  1080
EIDINALLDD EMLMDDEAFM SIAFE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836863.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like isoform X2
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A2I4FYZ6	0.0	A0A2I4FYZ6_JUGRE; calmodulin-binding transcription activator 2-like isoform X2
STRING	XP_008237378.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]