PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019021-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | LBD | ||||||||
Protein Properties | Length: 252aa MW: 28893.4 Da PI: 6.3378 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.1 | 6.9e-39 | 26 | 125 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaC+++rrkCa+dC+lapyfp++++k+f n+hklFG+sn++k++k+l++ ++e+am+++++++++ra+dPv G++++i++lq+ ++ k WALNUT_00019021-RA 26 ACAACRYQRRKCAPDCILAPYFPHDRQKQFLNAHKLFGVSNIIKIIKNLDQPDKEEAMRTIIFQSNVRANDPVGGCCRMIRDLQRLIDYNK 116 7****************************************************************************************** PP DUF260 92 aelallkee 100 ael+ + ++ WALNUT_00019021-RA 117 AELDIVLHQ 125 ***988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.434 | 25 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-36 | 26 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MYNKKQTYSL QGMNLRPRHG NGTTQACAAC RYQRRKCAPD CILAPYFPHD RQKQFLNAHK 60 LFGVSNIIKI IKNLDQPDKE EAMRTIIFQS NVRANDPVGG CCRMIRDLQR LIDYNKAELD 120 IVLHQLAICR AQAHDQQPDH SQIPNVLDAA FNSENDYINI SADPTLGSCN ASVLQYHYLG 180 QHQEPYFVIN NDSLQEDVNA WAVQDSLSMS SLHIKHGADD ECDDTKPVFE RSCERNEMKF 240 EAEDQRVERS SY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-24 | 22 | 120 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-24 | 22 | 120 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018808509.1 | 0.0 | PREDICTED: LOB domain-containing protein 22-like isoform X2 | ||||
Refseq | XP_018848595.1 | 0.0 | PREDICTED: LOB domain-containing protein 22 | ||||
Swissprot | Q9LRW1 | 2e-61 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | A0A2I4DMX6 | 0.0 | A0A2I4DMX6_JUGRE; LOB domain-containing protein 22 | ||||
STRING | cassava4.1_022118m | 1e-80 | (Manihot esculenta) | ||||
STRING | XP_002527399.1 | 1e-80 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 9e-64 | LOB domain-containing protein 22 |
Publications ? help Back to Top | |||
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