PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019021-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 252aa    MW: 28893.4 Da    PI: 6.3378
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019021-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.16.9e-39261251100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaC+++rrkCa+dC+lapyfp++++k+f n+hklFG+sn++k++k+l++ ++e+am+++++++++ra+dPv G++++i++lq+ ++  k
  WALNUT_00019021-RA  26 ACAACRYQRRKCAPDCILAPYFPHDRQKQFLNAHKLFGVSNIIKIIKNLDQPDKEEAMRTIIFQSNVRANDPVGGCCRMIRDLQRLIDYNK 116
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+ + ++
  WALNUT_00019021-RA 117 AELDIVLHQ 125
                         ***988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.43425126IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3626121IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MYNKKQTYSL QGMNLRPRHG NGTTQACAAC RYQRRKCAPD CILAPYFPHD RQKQFLNAHK  60
LFGVSNIIKI IKNLDQPDKE EAMRTIIFQS NVRANDPVGG CCRMIRDLQR LIDYNKAELD  120
IVLHQLAICR AQAHDQQPDH SQIPNVLDAA FNSENDYINI SADPTLGSCN ASVLQYHYLG  180
QHQEPYFVIN NDSLQEDVNA WAVQDSLSMS SLHIKHGADD ECDDTKPVFE RSCERNEMKF  240
EAEDQRVERS SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-24221207105LOB family transfactor Ramosa2.1
5ly0_B1e-24221207105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808509.10.0PREDICTED: LOB domain-containing protein 22-like isoform X2
RefseqXP_018848595.10.0PREDICTED: LOB domain-containing protein 22
SwissprotQ9LRW12e-61LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A2I4DMX60.0A0A2I4DMX6_JUGRE; LOB domain-containing protein 22
STRINGcassava4.1_022118m1e-80(Manihot esculenta)
STRINGXP_002527399.11e-80(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.19e-64LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]