PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019013-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 363aa    MW: 40780.6 Da    PI: 6.2207
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019013-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+lv+++   G g+W++++++ g+ R++k+c++rw +yl
  WALNUT_00019013-RA 14 RGLWSPEEDEKLVNYISTNGHGCWSSVPKHAGLQRCGKSCRLRWINYL 61
                        788*******************************************97 PP
2Myb_DNA-binding49.11.3e-1567109145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         rg++++eE  l++++++ lG++ W+ Ia+ ++ gRt++++k++w+
  WALNUT_00019013-RA  67 RGSFSPEEAALIIELHNILGNR-WAQIAKNLP-GRTDNEVKNFWN 109
                         899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-26664IPR009057Homeodomain-like
PROSITE profilePS5129424.662965IPR017930Myb domain
SuperFamilySSF466897.11E-2911108IPR009057Homeodomain-like
SMARTSM007172.3E-131363IPR001005SANT/Myb domain
PfamPF002495.7E-161461IPR001005SANT/Myb domain
CDDcd001671.01E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129418.92566116IPR017930Myb domain
SMARTSM007176.5E-1666114IPR001005SANT/Myb domain
PfamPF002492.3E-1467110IPR001005SANT/Myb domain
CDDcd001677.99E-1269109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGYHSCCNKQ KVKRGLWSPE EDEKLVNYIS TNGHGCWSSV PKHAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPEEAALIIE LHNILGNRWA QIAKNLPGRT DNEVKNFWNS SIKKMLIKQE  120
VSPAAITSNF PDTYCYHGNS DQESFLSLNA NPSWILRSQH EHNQLYPPIP TPLLQLVTFD  180
HGDLKLDQNT NFGTNLIHDF PPQMAPPSKS SSNDPRWSHQ LDPSQEQYKN FSIGATRHYL  240
EDNLILDPTI TAPHYDDHDE DSLTVPAMPK LCAITNGDVF SMPFSSSSQD CELLDPLARS  300
ELPCFPTAGS NYPPDPVHMM SNLQMEYVNA ITTPSSSPSA CSFSPFSSGQ FVTNAHFPPS  360
WDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30141147106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848606.10.0PREDICTED: transcription factor MYB24-like
SwissprotQ9SPG33e-72MYB26_ARATH; Transcription factor MYB26
TrEMBLA0A2I4GXH00.0A0A2I4GXH0_JUGRE; transcription factor MYB24-like
STRINGPOPTR_0001s20370.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.29e-78myb domain protein 26
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  3. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]