PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019004-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MYB_related | ||||||||
Protein Properties | Length: 71aa MW: 7947.37 Da PI: 10.2177 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.5 | 1.2e-11 | 5 | 33 | 1 | 29 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 +++WT+eE+e l+ +v+++G+g Wk I + WALNUT_00019004-RA 5 KQKWTAEEEEALLAGVAKHGPGKWKNILK 33 79*************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.772 | 1 | 41 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.88E-12 | 2 | 50 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-12 | 4 | 46 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-9 | 5 | 33 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.35E-14 | 6 | 47 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPHFAPF LTHRSNIGLK VLLLLLFYLL 60 PLFTPSSAHL A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018848601.1 | 6e-29 | PREDICTED: uncharacterized protein LOC109011745 | ||||
Swissprot | F4IEY4 | 2e-22 | TRB5_ARATH; Telomere repeat-binding factor 5 | ||||
TrEMBL | A0A2I4GXG5 | 1e-27 | A0A2I4GXG5_JUGRE; uncharacterized protein LOC109011745 | ||||
STRING | Gorai.009G143000.1 | 1e-27 | (Gossypium raimondii) | ||||
STRING | EOY27161 | 1e-27 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3228 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.2 | 3e-16 | MYB_related family protein |
Publications ? help Back to Top | |||
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