PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018903-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 258aa    MW: 28522.7 Da    PI: 10.0705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018903-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08167207954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  WALNUT_00018903-RA 167 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 207
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14162217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-6168207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-6181212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDVKQLRSEN QMEMMMMMEM NKLLPVFSEA YNSAAELPPL EQFSGASSGN KVGAMPQYID  60
IEPHMAPPSF VNLPSSTVSF SNTNPIHHES SEPVSFLSST SVGKWRGDLS GAGSFSAPSQ  120
KRNSMAAMRE MIFRIAAMQP IHIDPESVKP PKRRNVKISK DPQSVAARHR RERISERIRI  180
LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ VQSLERAAAN RPTGIGFQVA MSSGSYLPAM  240
AKAFQAPPQN VQPFEDAN
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860678.10.0PREDICTED: transcription factor HEC2-like isoform X1
SwissprotQ9SND42e-47HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2I4HX380.0A0A2I4HX38_JUGRE; transcription factor HEC2-like isoform X1
STRINGVIT_18s0001g10400.t011e-102(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]