PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00018771-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 310aa MW: 33868.1 Da PI: 8.9466 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.2 | 3.1e-37 | 31 | 90 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+s ntkfCyynnyslsqPry+CkaCrryWt+GG+lrnvPvGgg+rk k+++ WALNUT_00018771-RA 31 HHPQKCPRCESLNTKFCYYNNYSLSQPRYYCKACRRYWTQGGTLRNVPVGGGCRKGKRAK 90 6789***************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-25 | 24 | 88 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-32 | 33 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.444 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MHQERDGGGP EDMKAQDSKL KPLQAENDQH HHPQKCPRCE SLNTKFCYYN NYSLSQPRYY 60 CKACRRYWTQ GGTLRNVPVG GGCRKGKRAK TSSSAGENSR SQQPPQPQQV QQNLTNPPAI 120 IPSDPVFTPS PALMTTEPGN LASQSGASIH STAPYYAGGG NLSSLAAIQS LMNQPHSFSQ 180 ALTYARGSLE GSSNLDLLQG RFTVPSFGSQ QQQRQVQQRQ FYPMGNIDRS MEPLYFTGET 240 WSQSNRQTNT SSHDWYQSFL NNTNATAADT TLWSISTAAT ATGNANGNNN AASTSNPSQW 300 PNLPGFGPPP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018852450.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.1-like isoform X1 | ||||
TrEMBL | A0A2I4H8I3 | 0.0 | A0A2I4H8I3_JUGRE; dof zinc finger protein DOF2.1-like isoform X1 | ||||
STRING | Gorai.009G168400.1 | 3e-94 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60850.1 | 3e-34 | OBF binding protein 4 |