PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00018733-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C3H | ||||||||
Protein Properties | Length: 318aa MW: 34452.5 Da PI: 9.8597 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.9 | 1.7e-13 | 154 | 180 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykte+Cr + +G C+yG++C+FaHg+ WALNUT_00018733-RA 154 YKTEICRSWEDSGSCRYGSKCQFAHGK 180 9************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-18 | 151 | 185 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.812 | 153 | 181 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-10 | 153 | 184 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-9 | 153 | 180 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-10 | 154 | 180 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEGLLHSNSG NSNIPRLNGG LNGGVLMPMQ MDNQSLFGKG RHSYIHHHQQ SKSPTLAGSY 60 NENLDLGDSP LFRYLRTGSP DSYKRPPLSS VENLEMAWSP SIFSTPVKVE EEVLVMDGIL 120 VSSLPAGGRY ARSATDSGGS TTSSSSSSGG KSLYKTEICR SWEDSGSCRY GSKCQFAHGK 180 EELRPTRFPA KNKSEVQMYK SCSGTGSGTY GAKNRHVHQV VAAAGTVAAA AATTQTRSPA 240 KPETASPRKP EDMKKKPKTT ISRNNWSPQD DGIETLLPHS SSKKPPSRTD VDAHIDYTLY 300 GATPRKRLAV FADIRSER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00383 | ampDAP | Transfer from AT1G68200 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018851053.1 | 0.0 | PREDICTED: uncharacterized protein LOC109013421 isoform X1 | ||||
TrEMBL | A0A2I4H4I9 | 0.0 | A0A2I4H4I9_JUGRE; uncharacterized protein LOC109013421 isoform X1 | ||||
STRING | XP_008218882.1 | 3e-59 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11780 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 3e-10 | C3H family protein |