PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018731-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 319aa    MW: 34529.5 Da    PI: 9.7723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018731-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.91.7e-13154180127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykte+Cr +  +G C+yG++C+FaHg+
  WALNUT_00018731-RA 154 YKTEICRSWEDSGSCRYGSKCQFAHGK 180
                         9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.2E-18151185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.812153181IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-10153184IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-9153180IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10154180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEGLLHSNSG NSNIPRLNGG LNGGGLMPMQ MDNQSLFGKG RHSYIHHHQQ SKSPTLAGSY  60
NENLDLGDSP LFRYLRTGSP DSYKRPPLSS VENLEMAWSP SIFSTPVKVE EEVLVMDGIL  120
VASLPPGGRY ARSATDSGGS TTSSSSSSGG KSLYKTEICR SWEDSGSCRY GSKCQFAHGK  180
EELRPTRFPA KNKSEVQMYK SCSGTGSGIY GAKNRHVHQV VAAAGTVAAA AAATTQTRSP  240
AKPETASPRQ PEDMKKKPKT TISRNNWSPQ DDGIETLLPH SSSKKPPSRT DVDAHIDYTL  300
YGPTPRKRLA VFADIRSER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851012.10.0PREDICTED: tristetraprolin-like isoform X1
TrEMBLA0A2I4H4E30.0A0A2I4H4E3_JUGRE; tristetraprolin-like isoform X1
STRINGXP_010261083.11e-59(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-10C3H family protein