PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00018591-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | B3 | ||||||||
Protein Properties | Length: 726aa MW: 81157.2 Da PI: 6.7355 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.4 | 4.2e-21 | 576 | 673 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W+++++y ++ks++y+l+ ++ +Fv+angL+egDf+v++ ++ WALNUT_00018591-RA 576 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVRANGLQEGDFIVIY--SD 663 79*************************999999********7778*********777777777777.********************..56 PP .SEE..EEEE CS B3 88 .sefelvvkv 96 ++++++++ WALNUT_00018591-RA 664 vKCGKYMIRG 673 6999888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-29 | 570 | 685 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.35E-36 | 573 | 674 | No hit | No description |
SuperFamily | SSF101936 | 4.12E-23 | 574 | 669 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.983 | 575 | 677 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-21 | 575 | 677 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-17 | 576 | 672 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MNEFRNIDAN SSGFDAMEEE EALLGVDERQ IWLANEQYNL LADFHDASIL YTDRLPPLPH 60 DFPCMPPSSS SSSIPAPVKA ITCSSSSSST SSSSYAASWV LLKSDAEEDE DQKKCCFNHG 120 QHDPMDAPPA ALASTASTET PKPLDGSLEG VDCMDVMETL GYMDLSESND FFDPSYIFRS 180 DNPLEDFKQL EQMSREEHAM QENAHREHEQ LISQTKNKET QVEKDPEDMA TVFLEWLRTN 240 KETVSAEDLR SVRIKKATIE SAAKRLGGGK EAMKQLLKLV LEWVQSNHLK KSRSSKEEST 300 HFPNQYHDPF QNPNPNANLN SNSTTPESNP CFTALSTWIP QRDYVPEPTA VLEAPSAYPP 360 MVGYIGTGPY TDHGASNIND HSPYTATMME YQMPGSSHPW PPSQLALASH YNSFPGNSFH 420 PAPKACAGYG NQYPHQHYFS GHQDKRLLRF GSSATKEARK KRMARQRRFL SHHRHHHNNH 480 NQQNQHPSQN KDQHARLGND NCNTAAQANP GNWMYWPSVT ANGGAASASP VMPVEVAMGH 540 PADQTAAMQG QNFPGRVASD KRQGWKPEKN LRFLLQKVLK QSDVGNLGRI VLPKKEAETH 600 LPELEARDGI SIAMEDIGTS RVWNMRYRYW PNNKSRMYLL ENTGDFVRAN GLQEGDFIVI 660 YSDVKCGKYM IRGVKVRQTG QKSESKRTGK SQKNQQATSI ITTPPVVANG HGASSSRPHC 720 IQETVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 7e-38 | 571 | 675 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 7e-38 | 571 | 675 | 1 | 105 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018820311.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X2 | ||||
Swissprot | Q01593 | 1e-172 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A2I4ELP1 | 0.0 | A0A2I4ELP1_JUGRE; B3 domain-containing transcription factor ABI3-like isoform X2 | ||||
STRING | cassava4.1_021232m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9448 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-157 | B3 family protein |