PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00018589-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 549aa MW: 60319.8 Da PI: 6.7148 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.3 | 4.4e-16 | 339 | 385 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq WALNUT_00018589-RA 339 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 385 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.26E-20 | 333 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.146 | 335 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.54E-17 | 338 | 389 | No hit | No description |
Pfam | PF00010 | 1.3E-13 | 339 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-21 | 339 | 393 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-18 | 341 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MNHCVPDFEM DDDYSLPSSS GAARPRKSSL PEDEIMELLW QNGQVVMQSQ NQRSMRRSPP 60 SKYNNAVFPA DQSANREIRS SQEEQESATH QHQHLFMQED EMASWLHYPL VDDDPALDHN 120 FCADLLYPTP NQSNNITNTN ANLVVRTNDV TELRQKVTGG AGTSRPPIPP GRRTDLADSN 180 VQNFMHFSRP KGRLAAGVDS TRPPSSKSMA VVRESTVVDS SETPVVGPES WTRSAAEASD 240 FGNRGCPTMS CDAVAGTSSA GAGGKEMMSC EVTLTSSSGC SSASAEPARK PPVDYNRKRK 300 GIEAEDADCH CEDVEFESVA AKKQVHGSTS TKRSRAAEVH NLSERRRRDR INEKMKALQE 360 LIPRCNKSDK ASMLDEAIEY LKSLQLQVQM MSMGCGMVPM MFPGVQQYMP AMGMGIGMGM 420 GMDMGINRSM IPFPNMLAGS ALQTSAAAAH LGPRYPMPAF HMPPVPAPDP SRIQATNRPQ 480 QMLHSIGTQH TSQPRFPNFV DPYQQYVATH QMQLPIPQNQ ALAQQSTSKP NTMKGPEIPD 540 NHQSGRLVT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 343 | 348 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018820337.1 | 0.0 | PREDICTED: transcription factor PIF1-like isoform X2 | ||||
TrEMBL | A0A2I4ELR4 | 0.0 | A0A2I4ELR4_JUGRE; transcription factor PIF1-like isoform X2 | ||||
STRING | XP_010109673.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4607 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 5e-77 | phytochrome interacting factor 3-like 5 |