PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00018476-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 487aa MW: 54495.4 Da PI: 8.1275 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 2.9e-12 | 310 | 355 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+ +P+ K++Ka+ L Av YI++L WALNUT_00018476-RA 310 NHVEAERQRREKLNHRFYALRSAVPNV-----SKMDKASLLADAVVYINEL 355 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.4E-40 | 21 | 206 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 7.72E-17 | 303 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.774 | 306 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.50E-13 | 309 | 360 | No hit | No description |
Pfam | PF00010 | 8.8E-10 | 310 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-16 | 310 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-15 | 312 | 361 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MSSSPSSSLV SASHEAASTT LQQRLQFLLQ SRPEYWWVYS IFWQTTKDSN GCVALSWGDG 60 HFRGTARDFV SKSSNKGDVD PHIYGFSFEK KKTSKVVQAL FAEDMDLDGE MEAHAAQLYY 120 FYALSEARSF AVRDGVLDRA YSCGAYIWLT GDHDLQFYEC ERVKEARMRG IQTLLCVATS 180 RGVIELGSSD VIKEDWSLVQ LVKSLFDAEN TSSQVLKQAS QSGQMAITAK RDLPFLDIGM 240 CSQPQKEYST LQGRQTEVDA IKEGAGLFRS SSDSGRSDSD GNFPSENIEN VRLKKRGRKP 300 ASTGRESPLN HVEAERQRRE KLNHRFYALR SAVPNVSKMD KASLLADAVV YINELKAKIK 360 TLEAKLKAQS PRANINSGMS TYMYENQSRA TNIVHPTRTS SGFTTNTMEV EVKIVGSEAL 420 IRVQCPDVDY PHARLMNALR DLQLQIHHAS ISSVKELMLQ DVVVKFPDGS ESTGEAMRRA 480 ILERMRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-26 | 304 | 370 | 2 | 69 | Transcription factor MYC2 |
5gnj_B | 2e-26 | 304 | 370 | 2 | 69 | Transcription factor MYC2 |
5gnj_E | 2e-26 | 304 | 370 | 2 | 69 | Transcription factor MYC2 |
5gnj_F | 2e-26 | 304 | 370 | 2 | 69 | Transcription factor MYC2 |
5gnj_G | 2e-26 | 304 | 370 | 2 | 69 | Transcription factor MYC2 |
5gnj_I | 2e-26 | 304 | 370 | 2 | 69 | Transcription factor MYC2 |
5gnj_M | 2e-26 | 304 | 370 | 2 | 69 | Transcription factor MYC2 |
5gnj_N | 2e-26 | 304 | 370 | 2 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018814191.1 | 0.0 | PREDICTED: transcription factor MYC3-like | ||||
TrEMBL | A0A2I4E469 | 0.0 | A0A2I4E469_JUGRE; transcription factor MYC3-like | ||||
STRING | EOY23885 | 1e-172 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 1e-54 | bHLH family protein |