PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00018224-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18849 Da PI: 6.6518 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.2 | 7e-44 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+++ +l+ WALNUT_00018224-RA 10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRHVLRLQ 100 7****************************************************************************************** PP DUF260 92 aelallke 99 +el+++++ WALNUT_00018224-RA 101 KELEATNA 108 ***99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.616 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-43 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MASSSYSNSP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVLP 60 HQREDAVNSL AYEAEARIKD PVYGCVGAIS VLQRHVLRLQ KELEATNADL MRYACNEMPT 120 STPQFGRRMG THEGSSFGQS TSGSYYSSPW NNDPCDQDSQ DRSGGDHGNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-67 | 7 | 123 | 8 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-67 | 7 | 123 | 8 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018842374.1 | 1e-127 | PREDICTED: LOB domain-containing protein 25 | ||||
Refseq | XP_018842375.1 | 1e-127 | PREDICTED: LOB domain-containing protein 25 | ||||
Refseq | XP_018842377.1 | 1e-127 | PREDICTED: LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 3e-70 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A2I4GEP5 | 1e-126 | A0A2I4GEP5_JUGRE; LOB domain-containing protein 25 | ||||
STRING | POPTR_0001s35280.1 | 2e-97 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-72 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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