PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00017967-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 401aa MW: 45392.2 Da PI: 6.9107

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00017967-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	59.8	5.7e-19	98	134	2	38
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkv 38 prlrWtpeLH +Fv+ave+LGG+e+AtPk++l+lm++ WALNUT_00017967-RA 98 PRLRWTPELHLSFVHAVERLGGQERATPKSVLQLMSM 134 8**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-16	94	134	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-6	96	134	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-11	98	134	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MTEGSSDIYD NEESSSDRSE EQAAENASVV SSQRCSSFDL NEEACSTMAQ VAGLSNIEDD 60 HVKRIDGNSG NNDISGTDDQ GKERTSTRVR QYVRSKMPRL RWTPELHLSF VHAVERLGGQ 120 ERATPKSVLQ LMSMYRSKKL DEAGQVLGKT YSPLQGRNHM QGIDLHQTTS TTTHQHFRME 180 NGGIVLARHS DHHDQYNVGH SLLHSPLSQL SLDHMIKASF QRLQQCPATN QHDMRRASYL 240 LSKDIGGEKD FNSSSTAFEA QGNSTSSNQT HAMDKDIRIG PMRPSRFLEK KRYWPPSFET 300 ISSQWKVKRT NNNITWDNIV VANTNGRQLL SSSEDHLARN SNSFKPEFEP PFRLELNETK 360 MLKDNAWFPD LQLRLSQRVV NEDEKTHGTG THEISTMLSL S

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MTEGSSDIYD NEESSSDRSE EQAAENASVV SSQRCSSFDL NEEACSTMAQ VAGLSNIEDD  60
HVKRIDGNSG NNDISGTDDQ GKERTSTRVR QYVRSKMPRL RWTPELHLSF VHAVERLGGQ  120
ERATPKSVLQ LMSMYRSKKL DEAGQVLGKT YSPLQGRNHM QGIDLHQTTS TTTHQHFRME  180
NGGIVLARHS DHHDQYNVGH SLLHSPLSQL SLDHMIKASF QRLQQCPATN QHDMRRASYL  240
LSKDIGGEKD FNSSSTAFEA QGNSTSSNQT HAMDKDIRIG PMRPSRFLEK KRYWPPSFET  300
ISSQWKVKRT NNNITWDNIV VANTNGRQLL SSSEDHLARN SNSFKPEFEP PFRLELNETK  360
MLKDNAWFPD LQLRLSQRVV NEDEKTHGTG THEISTMLSL S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018847977.1	0.0	PREDICTED: uncharacterized protein LOC109011293 isoform X2
TrEMBL	A0A2I4GVQ8	0.0	A0A2I4GVQ8_JUGRE; uncharacterized protein LOC109011293 isoform X2
STRING	EOY27983	6e-98	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3012	32	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	7e-23	G2-like family protein