PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00017815-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27840.5 Da PI: 4.6807 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.7 | 2.5e-14 | 57 | 100 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A+eYI++Lq WALNUT_00017815-RA 57 VSERNRRKKLNDRLFALRAVVPNiS------KMDKASIIKDAIEYIQELQ 100 57*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.285 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-18 | 52 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.14E-14 | 53 | 104 | No hit | No description |
SMART | SM00353 | 8.0E-16 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-18 | 56 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-12 | 57 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDNISEEYTQ YRHYWETNMF LHSEELDSWG LDEAFSGDYD SSSPDGAASS LASKNIVSER 60 NRRKKLNDRL FALRAVVPNI SKMDKASIIK DAIEYIQELQ EQERRIQAEI TELESGKLNE 120 NPGYDFEEEL PVLLRSKKKK TDQFYESGGS RTSPIEVLEL RAIYMGEKTV VVSLTCSKRT 180 DTMVKLCEVF ESLKLKIITA TIAAFSGRLV KTVFVEADEG EKDQLKFKIE TAIAALNDPQ 240 SPMSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-13 | 55 | 100 | 9 | 54 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 55 | 100 | 9 | 54 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 55 | 100 | 9 | 54 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 55 | 100 | 9 | 54 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 55 | 100 | 9 | 54 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 55 | 100 | 9 | 54 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 55 | 100 | 9 | 54 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 55 | 100 | 9 | 54 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X98755 | 4e-48 | X98755.1 Quercus petraea/Quercus robur mixed clone library DNA microsatellite ga36. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018836607.1 | 0.0 | PREDICTED: transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 2e-92 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A2I4FY83 | 1e-180 | A0A2I4FY83_JUGRE; transcription factor bHLH35-like | ||||
STRING | XP_009348093.1 | 1e-150 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 1e-84 | bHLH family protein |