PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00017811-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | TCP | ||||||||
Protein Properties | Length: 370aa MW: 40793.2 Da PI: 7.4477 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.8 | 2.4e-31 | 50 | 182 | 2 | 126 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec.eaesssssas 83 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk i+WLl++ak +i+el+ + + ++ + ++++ as WALNUT_00017811-RA 50 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVIDWLLNAAKDEIDELPPLrippgnigP---NHPQmLTCHNEVGAS 137 689*************************************************************666653321...222233344444444 PP TCP 84 nsssg....kaaksaa..kskksqksaasalnlakesrakarararert 126 +s +g + + +s+ ++ ++++l++ s a++ + are WALNUT_00017811-RA 138 HSDEGfkmnS----GIqwEAGSSRLPKPNFWSLDALSGAQSEESARETI 182 4444432221....22133444444444457777777777777777743 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.322 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.8E-28 | 52 | 160 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MITSPKEADF PQKQEGSSSD HDKITKASSS STVPWLRLKD PRIVRVSRAF GGKDRHSKVC 60 TVRGLRDRRV RLSVPTAIQL YDLQERLGLN QPSKVIDWLL NAAKDEIDEL PPLRIPPGNI 120 GPNHPQMLTC HNEVGASHSD EGFKMNSGIQ WEAGSSRLPK PNFWSLDALS GAQSEESARE 180 TIDPKENWTK GNEEDKLGGN EGHAAQFPSN NFLPRVINSS SLPAGFLNSS MPYNYHNWDP 240 SSFPPSNSGS HGYTYRTEDT HNISSVMALP SSSSLPTGSQ ILVCPPGTTQ PFFPSHSMAS 300 GEIGPRQVNH FQMSSSNSHN LLQNSFTPPV FPISQSTRPF YFSMSTRKPL HSPNNSGSQA 360 NEDQDQFPSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-18 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018814629.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
Refseq | XP_018814630.1 | 0.0 | PREDICTED: transcription factor TCP13-like | ||||
TrEMBL | A0A2I4E5G0 | 0.0 | A0A2I4E5G0_JUGRE; transcription factor TCP13-like | ||||
STRING | EOY03699 | 1e-142 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 7e-51 | plastid transcription factor 1 |