PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017693-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GATA
Protein Properties Length: 101aa    MW: 10797.5 Da    PI: 10.782
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017693-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.96.9e-14228834
                GATA  8 kTplWRrgpdgnktLCnaCGlyyrkkg 34
                        k+plWR gp ++k+LCnaCG+ yrk++
  WALNUT_00017693-RA  2 KSPLWRGGPAKPKSLCNACGISYRKRR 28
                        89***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.37E-7229No hitNo description
PfamPF003201.7E-11228IPR000679Zinc finger, GATA-type
SMARTSM004016.3E-4241IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.1E-9228IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MKSPLWRGGP AKPKSLCNAC GISYRKRRIS MVGLSYGSYR KRDKSHCHGT SSATTTISDV  60
DTTTFTTLTV GNGGGRDLSM SLKTKLMALG KDLLLQGSPS V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848006.17e-47PREDICTED: GATA transcription factor 15-like isoform X1
RefseqXP_018848007.17e-47PREDICTED: GATA transcription factor 15-like isoform X2
TrEMBLA0A2I4GVS72e-45A0A2I4GVS7_JUGRE; GATA transcription factor 15-like isoform X1
TrEMBLA0A2I4GVT82e-45A0A2I4GVT8_JUGRE; GATA transcription factor 15-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.15e-14GATA transcription factor 17