PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017612-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 414aa    MW: 45232.4 Da    PI: 6.7133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017612-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-122422821055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +rRR++iN+++  L+ l+P++      K +Ka++L +A++Y+k+Lq
  WALNUT_00017612-RA 242 QRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIDYLKQLQ 282
                         79******************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.519232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16242301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9242282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16242292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-13242286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MVETRTRNVA PGYSSSFPLA DMYEAAPSSV TGGAPVSEEM SVSTFLDQFL HHNSFSSSKT  60
KYGHLHHLPQ LPQPPEATSA AGGFFSGENC RGFIRSANRY ESESESRVRD RNSGAAVESS  120
YGVNISNPGG YFIADAKVSD EKTFSSAGVV DSNAKERRVS FENNLCEFSC DSEVAGGSEV  180
KAKPVPLRSS SKRSRAAEVH NLSEKVGPQS YNLFVRRNAL IYNLPCGTMI SVFVLISLIG  240
RQRRRSKINE KMKALQNLIP NSNKTDKASM LDEAIDYLKQ LQVQVQMLSM RNGLSLHPMC  300
LPGVQQPRTG ISFGEGNGYL NSSSGMGTFP GNEESWRQSV YNLGNQCTLP SQPYVISSGK  360
NATTLETSFG FEESSQAHCE PLNLSYSKEI DDDRTLQLES DTSVIEKISA SNMS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822301.10.0PREDICTED: transcription factor SPATULA-like isoform X2
TrEMBLA0A2I4ESC40.0A0A2I4ESC4_JUGRE; transcription factor SPATULA-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-33bHLH family protein