PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00017609-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NAC

Protein Properties

Length: 311aa MW: 34706.1 Da PI: 6.4199

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00017609-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.3	2.8e-27	33	166	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 pG F+P++++l+++yL++k ++++ + + i+e+++yk++P dLp + + a++++wy ++ r+ k+++g +r+tksg+Wk WALNUT_00017609-RA 33 PGSGFNPSQQQLLCYYLTNKNNDDDdggSKGYDLIRELELYKYDPFDLPdAacfsyGFGARKRHWYCYAARNVKESRG--GRRKTKSGFWK 121 899***************99999787777789**********953777665555778999999999888765..4578999 PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyrl 128 g ++v+ ++ +vg++ ++vfy g+ pk +++tdWvmhey+l WALNUT_00017609-RA 122 -RGMVRAVVGPgGEVVVGTRSSFVFYLGHLPKtATRTDWVMHEYAL 166 .5777888887466779*****997665167*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-31	27	182	IPR003441	NAC domain
PROSITE profile	PS51005	32.452	31	182	IPR003441	NAC domain
Pfam	PF02365	3.8E-17	33	166	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MYKNLLNPLI SILLRNPLGD PQNPGAMSFL QHPGSGFNPS QQQLLCYYLT NKNNDDDDGG 60 SKGYDLIREL ELYKYDPFDL PDAACFSYGF GARKRHWYCY AARNVKESRG GRRKTKSGFW 120 KRGMVRAVVG PGGEVVVGTR SSFVFYLGHL PKTATRTDWV MHEYALIDHL KASFVLCRVF 180 AQSRAGNSIS ENGLSSCAEE SVSAVRHIGI QHDGYLTPDT LEPKMHDDNH VNRNQEIPKY 240 PMRSVSELDD LVMPGPVAVD RFPLPSGAQP REQMSSSVPP GSSAECFEGL TDQQVRSILE 300 EDFIELADLV P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-21	33	187	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-21	33	187	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-21	33	187	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-21	33	187	19	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-21	33	188	22	174	NAC domain-containing protein 19
3swm_B	2e-21	33	188	22	174	NAC domain-containing protein 19
3swm_C	2e-21	33	188	22	174	NAC domain-containing protein 19
3swm_D	2e-21	33	188	22	174	NAC domain-containing protein 19
3swp_A	2e-21	33	188	22	174	NAC domain-containing protein 19
3swp_B	2e-21	33	188	22	174	NAC domain-containing protein 19
3swp_C	2e-21	33	188	22	174	NAC domain-containing protein 19
3swp_D	2e-21	33	188	22	174	NAC domain-containing protein 19
4dul_A	2e-21	33	187	19	170	NAC domain-containing protein 19
4dul_B	2e-21	33	187	19	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018822310.1	0.0	PREDICTED: NAC domain-containing protein 72-like
TrEMBL	A0A2I4ESD9	0.0	A0A2I4ESD9_JUGRE; NAC domain-containing protein 72-like
STRING	XP_009359865.1	1e-106	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13001	26	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-20	NAC family protein