PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017600-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ZF-HD
Protein Properties Length: 356aa    MW: 39453.5 Da    PI: 9.6995
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017600-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.72.5e-32138193359
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         kvrY+eClkNh as+Ggh+vDGCgEfm+s g+egt++alkCaAC+CHRnFHR+eve 
  WALNUT_00017600-RA 138 KVRYRECLKNHVASTGGHVVDGCGEFMSS-GKEGTPEALKCAACECHRNFHRKEVEG 193
                         79**************************9.999*********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-21138193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.0E-30139191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-29140191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.925141190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.0E-30282354IPR009057Homeodomain-like
SuperFamilySSF466894.56E-20283353IPR009057Homeodomain-like
PROSITE profilePS500718.843290354IPR001356Homeobox domain
TIGRFAMsTIGR015653.7E-30292349IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MELRGQDKEI GMPSTLSYNP SHRESTNKLS SPIVASAVGE RRRDQTVHGN TIVNPVQALD  60
HRPVYHPHHP PPPPPPPQQS DPHPQQDAHK TRRDPDPNPD PVPALAATGA ISTPTSTGAS  120
TLKSPLPRST STIRAAPKVR YRECLKNHVA STGGHVVDGC GEFMSSGKEG TPEALKCAAC  180
ECHRNFHRKE VEGDSKYVSN CYYPNPSINN GQREMVPTQH HPPFPPPSAH VFHHHQKFPH  240
VLSTAPLTGA TAPMMMAFGG GGGAPAESSS EDLNMFRSNV GMQTSVQAPQ SKRRFRTKFT  300
QEQKDKMMEF AEKLGWKIQK HDDQEVQQFC SEVGVKRQVF KVWMHNNKQS MKKKQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-262933501875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018815604.10.0PREDICTED: zinc-finger homeodomain protein 6
SwissprotQ9ZPW72e-70ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A2I4E8770.0A0A2I4E877_JUGRE; zinc-finger homeodomain protein 6
STRINGEOX910761e-112(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-59homeobox protein 24