PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017543-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LSD
Protein Properties Length: 159aa    MW: 17389.8 Da    PI: 4.6195
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017543-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD144.13.3e-144266125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        Cg+Cr lL YPrGA++V+C++CdtV
  WALNUT_00017543-RA 42 CGSCRHLLKYPRGARHVKCSCCDTV 66
                        ************************9 PP

2zf-LSD139.21.1e-12108132125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+C +lL+YP+GA+sV C++C +V
  WALNUT_00017543-RA 108 CGSCEVLLMYPYGASSVMCSSCTFV 132
                         **********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.5E-183969IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-114266IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.6E-11105133IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-10108132IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MESKEVEAEE DEGPPPGWQS IPLPSSQSPL QPPLSEMAQM VCGSCRHLLK YPRGARHVKC  60
SCCDTVNLVL EDHMPMCITK VLIGDMSDTM SQDLSEVGST HEVGQVNCGS CEVLLMYPYG  120
ASSVMCSSCT FVTEITEHNR RPPWSVQQGQ PPSPPKPVQ
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820173.13e-85PREDICTED: protein LOL2 isoform X2
SwissprotO654262e-38LOL2_ARATH; Protein LOL2
TrEMBLA0A2I4EL988e-84A0A2I4EL98_JUGRE; protein LOL2 isoform X2
STRINGXP_004163439.12e-49(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-37lsd one like 2