PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017394-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 238aa    MW: 27001.3 Da    PI: 9.8308
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017394-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.3e-32160218159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  WALNUT_00017394-RA 160 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 218
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33145218IPR003657WRKY domain
SuperFamilySSF1182901.02E-28152219IPR003657WRKY domain
PROSITE profilePS5081129.585155220IPR003657WRKY domain
SMARTSM007744.0E-37160219IPR003657WRKY domain
PfamPF031062.1E-25161217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSTTSQTMLN HGLLEDQDPV PPHMGFFPFP SNLTSLPPLG FHQSRSLKAF STIPPSLASD  60
APSSNLSETF FSSATTKQRE DITSPGCRGS QLLSLNRSSA NLWAWGDVGE SLTGKRGGGD  120
LDHHHHHLGV SSMKMKKIKG RRKVREPRFC FKTMSDVDVL DDGYKWRKYG QKVVKNTQHP  180
RSYYRCTQDN CRVKKRVERL AEDPRMVITT YEGRHAHSPS HDMEDQSQTP SHLNNFFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26151217874Probable WRKY transcription factor 4
2lex_A2e-26151217874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846210.11e-180PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB72e-63WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A2I4GQP51e-179A0A2I4GQP5_JUGRE; probable WRKY transcription factor 13
STRINGVIT_07s0031g01840.t011e-119(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-63WRKY DNA-binding protein 13