PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017312-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Dof
Protein Properties Length: 291aa    MW: 32678.9 Da    PI: 5.0443
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017312-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.65.5e-383692662
              zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++++
  WALNUT_00017312-RA 36 PNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRAK 92
                        58****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-272090IPR003851Zinc finger, Dof-type
PfamPF027013.8E-323690IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6683690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MFTTCGGHDQ MLHHFCPPRP LVMDGSGWRT NVELAPNCPR CASSNTKFCY YNNYSLSQPR  60
YFCKGCRRYW TKGGSLRNVP VGGGCRKNRR AKSSRLLQRQ RGAWLSSSTS PDKSADSCEY  120
SNGEDSASHR SETSGADIDL AVVFARFVNQ NPSTEPEFRT VPELRPDDHS NVLADSSPSS  180
LNQGDDDQQH KTAFEYHEKP INGGEADHML LEGFPREEKV NDQVFIEDDV NAFGLQNLLD  240
DEVVQYALWS DDATANLTNF MWCADQSRTN LITDGTWSSL DFSGFEVFSR P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839864.10.0PREDICTED: dof zinc finger protein DOF3.5-like
TrEMBLA0A2I4G7I80.0A0A2I4G7I8_JUGRE; dof zinc finger protein DOF3.5-like
STRINGPOPTR_0005s21130.19e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.15e-40Dof family protein