PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00017311-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Dof

Protein Properties

Length: 296aa MW: 33202.3 Da PI: 4.9392

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00017311-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.6	5.7e-38	36	92	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++++ WALNUT_00017311-RA 36 PNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRAK 92 58****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	20	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	36	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.668	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MFTTCGGHDQ MLHHFCPPRP LVMDGSGWRT NVELAPNCPR CASSNTKFCY YNNYSLSQPR 60 YFCKGCRRYW TKGGSLRNVP VGGGCRKNRR AKSSRLLQRQ RGAWLSSSTS PDHNGNDKSA 120 DSCEYSNGED SASHRSETSG ADIDLAVVFA RFVNQNPSTE PEFRTVPELR PDDHSNVLAD 180 SSPSSLNQGD DDQQHKTAFE YHEKPINGGE ADHMLLEGFP REEKVNDQVF IEDDVNAFGF 240 QNLLDDEVVQ DALWSDDATA NLTNFMWCAD QSRTNLITDG TWSSLDFSGF EVFSRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018839864.1	0.0	PREDICTED: dof zinc finger protein DOF3.5-like
TrEMBL	A0A2I4G7I8	0.0	A0A2I4G7I8_JUGRE; dof zinc finger protein DOF3.5-like
STRING	POPTR_0005s21130.1	4e-84	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	2e-42	Dof family protein