PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017269-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 762aa    MW: 85418.9 Da    PI: 5.3787
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017269-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS368.58.8e-1133857591373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+avs+gd++ a++lL+++++++sp+gd  qRla++++++L+arla++++++    ++ ++++++  e l+a++++  ++P+ 
  WALNUT_00017269-RA 385 LRSLLILCAQAVSTGDNRTANELLKQIRQHSSPYGDGCQRLAHFMANGLEARLAGTGTGTQIFYSSLTSKKMSAFEMLKAYNVLLSACPFK 475
                         6899***************************************************9888887778888888889***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         ++s   aN++I++  e++  +HiiDf++++G+QWp L+++L++Rp+gpp+lRiTg++ p +g   +e++eetg+rLak++e+++vpfe+++
  WALNUT_00017269-RA 476 RISLYFANKMIYRLSEKAASIHIIDFGVGYGFQWPILIHKLSKRPGGPPKLRITGIDCPLPGfrPTERIEETGRRLAKYCERFNVPFEYHA 566
                         **********************************************************999999*************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         ++++++e++++e+L+++++E+laVn+ ++ ++llde+ + +s+r++vL+l+++++P+v+v++  +  +n++ F++rf eal ++sal+d+l
  WALNUT_00017269-RA 567 IASQNWETIQIEDLKIDRNEMLAVNCLYRFKNLLDETDEGTSPRNAVLNLIRRMNPDVFVHSIVNGAYNAPFFVTRFREALFHFSALYDAL 657
                         *999*************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         e+++ +es+er + Ere+ gre++n++aceg +r+er et+++W+ r ++aGFkp+pl+++ ++  k++  + + + + ++e++ +l+lgW
  WALNUT_00017269-RA 658 ENNIKHESQERLMFEREFYGREAMNAIACEGLQRVERPETYKQWHVRTTRAGFKPLPLNQELVNMFKSITMEWYHKDFVLDEDNRWLLLGW 748
                         **************************************************************************888************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r ++++S+W
  WALNUT_00017269-RA 749 KGRIVYACSCW 759
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.079359740IPR005202Transcription factor GRAS
PfamPF035143.0E-110385759IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MDQSSHGSPN FIHVDDLTDF NQHPNLLNDY AFNVPSPDLT FLESPLLIPD AESTGFAPPM  60
SLGSAAEAYA PSAAAGSLSP ASVITSPGGS SPSDDSEFSE TVLKFMSQIL MEENIEEKPC  120
MFYDPLGLQS TEKSFYDALG REYPPPNQHR LVESPDDVFS GSSSDYGTNS STSTDPQWFG  180
DIVEYKSSFP QATLPSEYVF QPNSQSNDGS QFLVNSSNTL SNTGDGVELL AENIFTDTET  240
MLQFRRGLEE ASKFLPSGNQ LGIDLNSSMV QPQWKGYDHK VEKGQMKNSP DGSRGRKNHE  300
REAIDIEEGR SNKQSAIYVD NEELSEIFDK VLLSTDGLAL QCSNGEPPKN GATKPSQRNE  360
QPQGGNGGGK SRAKKQGKTK DTVDLRSLLI LCAQAVSTGD NRTANELLKQ IRQHSSPYGD  420
GCQRLAHFMA NGLEARLAGT GTGTQIFYSS LTSKKMSAFE MLKAYNVLLS ACPFKRISLY  480
FANKMIYRLS EKAASIHIID FGVGYGFQWP ILIHKLSKRP GGPPKLRITG IDCPLPGFRP  540
TERIEETGRR LAKYCERFNV PFEYHAIASQ NWETIQIEDL KIDRNEMLAV NCLYRFKNLL  600
DETDEGTSPR NAVLNLIRRM NPDVFVHSIV NGAYNAPFFV TRFREALFHF SALYDALENN  660
IKHESQERLM FEREFYGREA MNAIACEGLQ RVERPETYKQ WHVRTTRAGF KPLPLNQELV  720
NMFKSITMEW YHKDFVLDED NRWLLLGWKG RIVYACSCWV PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-523687611379Protein SCARECROW
5b3h_D6e-523687611379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850470.10.0PREDICTED: scarecrow-like protein 33
RefseqXP_018850471.10.0PREDICTED: scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2I4H2T80.0A0A2I4H2T8_JUGRE; scarecrow-like protein 33
STRINGXP_009364376.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]