PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017268-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 761aa    MW: 86488.5 Da    PI: 6.7999
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017268-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.13.3e-1103837581373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL  cA+avs+gd++ a++lL++++e++sp g   qRla++f+++L+arla++++++    ++  +++ ++ e ++++k+   v+P+ 
  WALNUT_00017268-RA 383 LRTLLNLCAQAVSAGDNRTANELLKQIREHSSPFGVGSQRLAHFFANGLEARLAGTGTGTQIFYTALVSKKISTYEIINSYKVHLSVCPFK 473
                         578999*************************************************77776655555556656699**************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         ++s + a q+I++ +e+++ +HiiDf+i++G+QWp L+q+L++R++gpp+lRiTg++ p++g   +e+leetg+rL k++e+++vpfe++v
  WALNUT_00017268-RA 474 RISVFFADQMIYKVAEKATSLHIIDFGIQYGFQWPILIQKLSKRSGGPPKLRITGIELPQPGfrPTETLEETGRRLGKYCERFNVPFEYHV 564
                         *************************************************************9*9*************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         ++++++e++++e+L+++++E+laVn+ ++ ++llde+ ++e  +r++vL+l+++++P+++v +  +  +n++ F++rf eal ++sal+d 
  WALNUT_00017268-RA 565 IASQSWETIQIEDLKIDRNEMLAVNCLYRFKNLLDETFEVETsPRNAVLNLIRRMNPNIFVYSVCNGAYNAPFFVTRFREALFHFSALYDI 655
                         9999***********************************99889*********************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         +e++lpre++er   Ere+ gre++nv+a eg er+er et+++W+ r ++aGF+++pl++++++  ++ l++ + + + ++e+++++++g
  WALNUT_00017268-RA 656 FEVTLPRENKERLLFEREFYGREAMNVIASEGLERVERPETYRQWQVRTMRAGFRQLPLDKDIVNILRSKLKEWHHKDFVLDEDNHWMLQG 746
                         ***************************************************************************888************* PP

                GRAS 362 WkdrpLvsvSaW 373
                         Wk+r +++ S+W
  WALNUT_00017268-RA 747 WKGRIVYASSCW 758
                         ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.045357739IPR005202Transcription factor GRAS
PfamPF035141.1E-107383758IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MVVDPSFSGL PDFVKDIMVP GHTILPNSNY SRDLYFLGNA FPPPALPPAA EPYAPSAAAG  60
SLRPTSMGAS PPSDSSSDES EYSETVLKFM TQILMEDNIE DKPCMFFDPL GLQITEKSFY  120
DALGKKYPPS PNQYKLPSYI NHNPDTKNRS HNGPKSNFTN TDPQWLGHLG EYNSSFSQAT  180
LPGQYVSQPD LQSNRESQPF ANPSNGVSTI GDGLELLTRN FFTDTESMLQ FRRGLEEASK  240
FLPRSNQMVI DLERSNIRHR DNPGSFSKVS QQWEGEGQMV VKSERGNLLI GSRGRKNHER  300
EDVGLEEGRI NKQPAVSAEE NELSDLFDEV LLSTDALSTL GSDNKVEQNE ASNASYTYQQ  360
PQEANGGKNR TKKQRKKKDT VDLRTLLNLC AQAVSAGDNR TANELLKQIR EHSSPFGVGS  420
QRLAHFFANG LEARLAGTGT GTQIFYTALV SKKISTYEII NSYKVHLSVC PFKRISVFFA  480
DQMIYKVAEK ATSLHIIDFG IQYGFQWPIL IQKLSKRSGG PPKLRITGIE LPQPGFRPTE  540
TLEETGRRLG KYCERFNVPF EYHVIASQSW ETIQIEDLKI DRNEMLAVNC LYRFKNLLDE  600
TFEVETSPRN AVLNLIRRMN PNIFVYSVCN GAYNAPFFVT RFREALFHFS ALYDIFEVTL  660
PRENKERLLF EREFYGREAM NVIASEGLER VERPETYRQW QVRTMRAGFR QLPLDKDIVN  720
ILRSKLKEWH HKDFVLDEDN HWMLQGWKGR IVYASSCWVP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-493667601379Protein SCARECROW
5b3h_D1e-493667601379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850468.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2I4H2U50.0A0A2I4H2U5_JUGRE; scarecrow-like protein 34
STRINGXP_009364376.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]