PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00017211-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 478aa MW: 54631.4 Da PI: 8.2239 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 410 | 464 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r+ WT+eE++ l+++v+++ + W++I + ++Rt+ ++k++w + WALNUT_00017211-RA 410 RLFWTAEEEDMLKEGVHKFSTSankniPWRKILEFGRhifhTTRTPVDLKDKWKN 464 678*****************99***********9999****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 7.31E-8 | 73 | 130 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.1E-7 | 73 | 124 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE pattern | PS01359 | 0 | 77 | 120 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS51294 | 9.362 | 405 | 470 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-9 | 406 | 469 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.97E-11 | 407 | 467 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-6 | 409 | 468 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.30E-11 | 413 | 466 | No hit | No description |
Pfam | PF00249 | 2.8E-6 | 413 | 465 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence Send to blast |
MRTKTRLGGR PKPCTSPTAT TNRALPLLHD QPEDFMQTIM HEMSSACNEG LHDDSALNLN 60 EDTVDCMEID SFKERTCIRC NRGGDVLVCR EIGCPIALHE KCVCFKPKFD AFGRFYCPYC 120 SYKRTMVETR QFRKKAMLAK KALLKFVSAN AVGGNGQKLE DSGEAKRKES NVSLPHVRNR 180 NSPDHEKCVW VEDLQDDRFE AHNRVIDELH TNHSIPNACS NVHFREEEIV TEEKSNDVNI 240 SEAHLSDFIE DRERLQAEDA SRMDESQNEG SFEEDEEQAQ PLTTCNSDEV MTVDEGLHAP 300 REGAQDGLEA SAENKGKRDG EHKLQPEAPT SRPKRFKQRA QKKARPQNAG LQRKLSPHKY 360 MTPVKDSRKP NDDVATSKNK KVTASNKSRQ ARESPKKFTK MTFPNVKRKR LFWTAEEEDM 420 LKEGVHKFST SANKNIPWRK ILEFGRHIFH TTRTPVDLKD KWKNMTAKDS STINKESP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018833313.1 | 0.0 | PREDICTED: uncharacterized protein LOC109000767 | ||||
Refseq | XP_018833314.1 | 0.0 | PREDICTED: uncharacterized protein LOC109000767 | ||||
Refseq | XP_018833315.1 | 0.0 | PREDICTED: uncharacterized protein LOC109000767 | ||||
TrEMBL | A0A2I4FNS8 | 0.0 | A0A2I4FNS8_JUGRE; uncharacterized protein LOC109000767 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12055 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58340.2 | 6e-08 | MYB_related family protein |