PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017168-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 314aa    MW: 35710.1 Da    PI: 7.8
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017168-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W++eEde+l+++ +  G g+W+++++  g++R++k+c++rw +yl
  WALNUT_00017168-RA 14 RGLWSPEEDEKLIRYLTTRGHGSWSSVPKLAGLHRCGKSCRLRWINYL 61
                        788*******************************************97 PP
2Myb_DNA-binding54.52.7e-1767110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T+eE+++++d+++  G++ W+ Ia++++ gRt++++k++w++
  WALNUT_00017168-RA  67 RGSFTPEEEQIIIDVHRIVGNK-WAQIAKHLP-GRTDNEVKNFWNS 110
                         89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-24664IPR009057Homeodomain-like
PROSITE profilePS5129417.959961IPR017930Myb domain
SuperFamilySSF466891.05E-2911108IPR009057Homeodomain-like
SMARTSM007179.8E-121363IPR001005SANT/Myb domain
PfamPF002493.3E-141461IPR001005SANT/Myb domain
CDDcd001673.18E-91761No hitNo description
PROSITE profilePS5129425.48262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2665115IPR009057Homeodomain-like
SMARTSM007173.3E-1666114IPR001005SANT/Myb domain
PfamPF002497.6E-1667110IPR001005SANT/Myb domain
CDDcd001677.99E-1269109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGSHRCCNKQ KIKRGLWSPE EDEKLIRYLT TRGHGSWSSV PKLAGLHRCG KSCRLRWINY  60
LRPDLKRGSF TPEEEQIIID VHRIVGNKWA QIAKHLPGRT DNEVKNFWNS CIKKRFLSQG  120
LDPNTHNLIS SHQKAFGKVA CSISQSRHDQ QPISVFTLNS QNTDSMKMEI PNPPPSLLQT  180
MAITTTEDRN PNVASNFGYT PYISSSSSSS SLNSSGFGII NHERETAPLQ HCGTPRIEGE  240
RPILRQEQQF EKNEYHQICE VETDQISELA KGNQNMNASV GSSDLDLLDQ YMESTLMSGL  300
MYYDLSYIDD FAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806422.10.0PREDICTED: transcription repressor MYB6-like isoform X2
TrEMBLA0A2I4DH040.0A0A2I4DH04_JUGRE; transcription repressor MYB6-like isoform X2
STRINGXP_008226043.11e-104(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-84myb domain protein 67