PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017011-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 333aa    MW: 37411.3 Da    PI: 5.8821
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017011-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.1e-30179236158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers +d ++v++tYeg+H+ 
  WALNUT_00017011-RA 179 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSCDDSTIVVTTYEGQHTY 236
                         59******************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.4E-955331IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.3E-32164238IPR003657WRKY domain
SuperFamilySSF1182906.41E-28171239IPR003657WRKY domain
PROSITE profilePS5081131.123174239IPR003657WRKY domain
SMARTSM007746.5E-35179240IPR003657WRKY domain
PfamPF031063.0E-24180235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MIESMDRKDQ ELKTENSLMA NSTFSDEIPS SFALPASIFD MPCDHLGDHQ KGSSSGFMDM  60
LAGISDYDPS LFEWFSAPMM SQPQQQQQQQ EQQHPLPSPA STFPESSEVV NTPATPNSSS  120
ISSSSNEAAN EGQNKAGGEE EDQDDQDKNK KQLKPKKKNQ KRQREPRFAF MTKSEVDHLD  180
DGYRWRKYGQ KAVKNSPYPR SYYRCTTAGC GVKKRVERSC DDSTIVVTTY EGQHTYTCPV  240
TPRGSIGIAT EAAGYSSLSS PFVVPQPQYQ QQQHPYIYSS QLPLNVNTTN LNPSFPHFVQ  300
ERRFGTSSAT LLRDHGLLQD IVPSQMRKEP KEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-271722391077Probable WRKY transcription factor 4
2lex_A8e-271722391077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774511e-61GQ377451.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 31 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847229.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ49e-60WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A2I4GTK00.0A0A2I4GTK0_JUGRE; probable WRKY transcription factor 48
STRINGEOY067681e-119(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-46WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]